miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25968 5' -55.9 NC_005337.1 + 30256 0.66 0.901811
Target:  5'- -gCGCaggcGCGGGCAGGCGgUCcaCGGCg -3'
miRNA:   3'- uaGCGgc--UGCUCGUUUGCgAGa-GCCG- -5'
25968 5' -55.9 NC_005337.1 + 91774 0.66 0.901811
Target:  5'- cGUCuCCGG-GAGCAGuuccgcGCGCUCcacggCGGCg -3'
miRNA:   3'- -UAGcGGCUgCUCGUU------UGCGAGa----GCCG- -5'
25968 5' -55.9 NC_005337.1 + 10904 0.66 0.901811
Target:  5'- gAUCGCCG-CGucGCGcACGCUCUgCGcGUc -3'
miRNA:   3'- -UAGCGGCuGCu-CGUuUGCGAGA-GC-CG- -5'
25968 5' -55.9 NC_005337.1 + 74583 0.66 0.901811
Target:  5'- -aCGCgGACGcGCuguCGCgcaUCGGCg -3'
miRNA:   3'- uaGCGgCUGCuCGuuuGCGag-AGCCG- -5'
25968 5' -55.9 NC_005337.1 + 82077 0.66 0.901811
Target:  5'- --gGCgUGAUGuAGCGGACGCggUCGGCc -3'
miRNA:   3'- uagCG-GCUGC-UCGUUUGCGagAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 14052 0.66 0.901811
Target:  5'- -cUGCuCGGCGAuGCugucCGC-CUCGGCg -3'
miRNA:   3'- uaGCG-GCUGCU-CGuuu-GCGaGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 131899 0.66 0.901811
Target:  5'- uGUCGUCGACgcacccgauaGAGCAccuGGCGCggaUCGuGCg -3'
miRNA:   3'- -UAGCGGCUG----------CUCGU---UUGCGag-AGC-CG- -5'
25968 5' -55.9 NC_005337.1 + 83545 0.66 0.895291
Target:  5'- aAUCGUCGGCaaGGGCAAACGCgga-GGa -3'
miRNA:   3'- -UAGCGGCUG--CUCGUUUGCGagagCCg -5'
25968 5' -55.9 NC_005337.1 + 48391 0.66 0.895291
Target:  5'- -gCGCCuuCGAGCc-GCGCacggagacgCUCGGCg -3'
miRNA:   3'- uaGCGGcuGCUCGuuUGCGa--------GAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 131309 0.66 0.895291
Target:  5'- cGUCGCCGaguGCGAgGCGGagaccGCGCUCaugCGcGCc -3'
miRNA:   3'- -UAGCGGC---UGCU-CGUU-----UGCGAGa--GC-CG- -5'
25968 5' -55.9 NC_005337.1 + 68917 0.66 0.895291
Target:  5'- --aGuuGACGAGCuGGACGUUCUUcacguccaGGCc -3'
miRNA:   3'- uagCggCUGCUCG-UUUGCGAGAG--------CCG- -5'
25968 5' -55.9 NC_005337.1 + 128383 0.66 0.895291
Target:  5'- cUCGCgacaCGACGAGUccAUGCUggCGGCc -3'
miRNA:   3'- uAGCG----GCUGCUCGuuUGCGAgaGCCG- -5'
25968 5' -55.9 NC_005337.1 + 38659 0.66 0.892617
Target:  5'- cAUCGCucaaaccCGACGugcAGCAGACGCuguucgccgccuggUgUCGGCg -3'
miRNA:   3'- -UAGCG-------GCUGC---UCGUUUGCG--------------AgAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 12692 0.66 0.888536
Target:  5'- cUC-CCGGCGcGCGuacAUGCggugCUCGGCg -3'
miRNA:   3'- uAGcGGCUGCuCGUu--UGCGa---GAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 34664 0.66 0.888536
Target:  5'- -gCGCaCGACGuAGCcguUGCUCaCGGCg -3'
miRNA:   3'- uaGCG-GCUGC-UCGuuuGCGAGaGCCG- -5'
25968 5' -55.9 NC_005337.1 + 9971 0.66 0.888536
Target:  5'- -gCGCCgcGACGAGgccGCGUcCUCGGCc -3'
miRNA:   3'- uaGCGG--CUGCUCguuUGCGaGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 14665 0.66 0.888536
Target:  5'- cAUCaGCgCGGCGAGaCAGGaguugcaGCgCUCGGCg -3'
miRNA:   3'- -UAG-CG-GCUGCUC-GUUUg------CGaGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 16613 0.66 0.888536
Target:  5'- -aCGCCGuGCGuGCccgacuucuucGAGCGCUCcaccaCGGCg -3'
miRNA:   3'- uaGCGGC-UGCuCG-----------UUUGCGAGa----GCCG- -5'
25968 5' -55.9 NC_005337.1 + 92463 0.66 0.888536
Target:  5'- -cCGCCGGuucCuGGCGAACGCcUCgaCGGCg -3'
miRNA:   3'- uaGCGGCU---GcUCGUUUGCG-AGa-GCCG- -5'
25968 5' -55.9 NC_005337.1 + 10271 0.66 0.888536
Target:  5'- cAUCGgCGGCGgcgcguucAGCAuggcGCGCgcaUCGGCg -3'
miRNA:   3'- -UAGCgGCUGC--------UCGUu---UGCGag-AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.