miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25968 5' -55.9 NC_005337.1 + 84293 0.71 0.611124
Target:  5'- uUCGCCaGGuccCGGGCgAAGCGCUUUCGGa -3'
miRNA:   3'- uAGCGG-CU---GCUCG-UUUGCGAGAGCCg -5'
25968 5' -55.9 NC_005337.1 + 39100 0.73 0.519763
Target:  5'- gGUCGCCGugGcGCGGAaGCUCgcgGGCa -3'
miRNA:   3'- -UAGCGGCugCuCGUUUgCGAGag-CCG- -5'
25968 5' -55.9 NC_005337.1 + 83288 0.73 0.529696
Target:  5'- --gGCCGACGA-CGAACGCg--CGGCg -3'
miRNA:   3'- uagCGGCUGCUcGUUUGCGagaGCCG- -5'
25968 5' -55.9 NC_005337.1 + 47576 0.73 0.529696
Target:  5'- -cCGCCGACGAGCcgcaGCcgCUgGGCg -3'
miRNA:   3'- uaGCGGCUGCUCGuuugCGa-GAgCCG- -5'
25968 5' -55.9 NC_005337.1 + 129264 0.73 0.529696
Target:  5'- -aCGCCGACGuGCucgaccuGACGCUgCUCgaGGCa -3'
miRNA:   3'- uaGCGGCUGCuCGu------UUGCGA-GAG--CCG- -5'
25968 5' -55.9 NC_005337.1 + 12980 0.72 0.559883
Target:  5'- gGUCGgaGGCGAGCcGGCGUaugUCUCGGUc -3'
miRNA:   3'- -UAGCggCUGCUCGuUUGCG---AGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 53657 0.72 0.590529
Target:  5'- gAUCGCCG-CGAuGC-AGCGCg-UCGGCg -3'
miRNA:   3'- -UAGCGGCuGCU-CGuUUGCGagAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 115649 0.71 0.600815
Target:  5'- cAUCGCCGAgGAGUgugcgAAGaaaGCcCUCGGCu -3'
miRNA:   3'- -UAGCGGCUgCUCG-----UUUg--CGaGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 70865 0.71 0.606998
Target:  5'- -gCGCUGuACGAGCGcgccauguccagcGCGCUCUgCGGCg -3'
miRNA:   3'- uaGCGGC-UGCUCGUu------------UGCGAGA-GCCG- -5'
25968 5' -55.9 NC_005337.1 + 35566 0.73 0.519763
Target:  5'- -gCGCCGcGCGAGCGGAUGC-CUagcgaGGCg -3'
miRNA:   3'- uaGCGGC-UGCUCGUUUGCGaGAg----CCG- -5'
25968 5' -55.9 NC_005337.1 + 46469 0.73 0.506963
Target:  5'- -gCGCCGGCGAGCucccgggcagcagccGCGC-CUUGGCc -3'
miRNA:   3'- uaGCGGCUGCUCGuu-------------UGCGaGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 69288 0.74 0.471309
Target:  5'- -gCGCgCGACGGGCAGuucGCGCgggagaaggccuUCUCGGUg -3'
miRNA:   3'- uaGCG-GCUGCUCGUU---UGCG------------AGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 46218 0.78 0.283944
Target:  5'- cUCGCCGACGAGCAcguACGCgaucagcgUGGCg -3'
miRNA:   3'- uAGCGGCUGCUCGUu--UGCGaga-----GCCG- -5'
25968 5' -55.9 NC_005337.1 + 68428 0.76 0.341751
Target:  5'- -cCGCCGACGA-CGAGucCGCUCUCGGa -3'
miRNA:   3'- uaGCGGCUGCUcGUUU--GCGAGAGCCg -5'
25968 5' -55.9 NC_005337.1 + 44501 0.75 0.390401
Target:  5'- cGUCaCCGACGcGCAAcucGCGCUCgCGGCg -3'
miRNA:   3'- -UAGcGGCUGCuCGUU---UGCGAGaGCCG- -5'
25968 5' -55.9 NC_005337.1 + 45085 0.75 0.390401
Target:  5'- -gUGCCGACGuGCccuacguaauAGACGC-CUCGGCg -3'
miRNA:   3'- uaGCGGCUGCuCG----------UUUGCGaGAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 73797 0.75 0.407593
Target:  5'- --aGCCGcACGAGCucACGCUCgacuuccgCGGCa -3'
miRNA:   3'- uagCGGC-UGCUCGuuUGCGAGa-------GCCG- -5'
25968 5' -55.9 NC_005337.1 + 122202 0.75 0.407593
Target:  5'- cAUCGCCG-CGGGCGcgGACGUg-UCGGCg -3'
miRNA:   3'- -UAGCGGCuGCUCGU--UUGCGagAGCCG- -5'
25968 5' -55.9 NC_005337.1 + 122904 0.74 0.43425
Target:  5'- -cCGCCGAUG-GCGAGCGCgCUCgagGGCg -3'
miRNA:   3'- uaGCGGCUGCuCGUUUGCGaGAG---CCG- -5'
25968 5' -55.9 NC_005337.1 + 51626 0.74 0.471309
Target:  5'- uUCGgCGACGAGCugcggucGGCGCUCcgCGGUc -3'
miRNA:   3'- uAGCgGCUGCUCGu------UUGCGAGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.