Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25969 | 3' | -56.6 | NC_005337.1 | + | 133873 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134056 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 133995 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 133934 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 133873 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134178 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134231 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134117 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134231 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134178 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134117 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 134056 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 133995 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 133934 | 1.08 | 0.002637 |
Target: 5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3' miRNA: 3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 43695 | 0.76 | 0.345918 |
Target: 5'- gGGUUC-CGGGUCcacgugAGCUCGUCCGUGUa -3' miRNA: 3'- -UCAAGaGCUCAG------UCGGGCAGGCACGc -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 66702 | 0.74 | 0.428992 |
Target: 5'- uAGcgCUUuagGAGcUCGGCCaCGUCCGUGCGg -3' miRNA: 3'- -UCaaGAG---CUC-AGUCGG-GCAGGCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 101090 | 0.71 | 0.61309 |
Target: 5'- ----gUCGGGagGGCCCGUCCG-GCGc -3' miRNA: 3'- ucaagAGCUCagUCGGGCAGGCaCGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 91625 | 0.7 | 0.643717 |
Target: 5'- --aUCUCGGG-CGGCCCGaggaUGUGCGg -3' miRNA: 3'- ucaAGAGCUCaGUCGGGCag--GCACGC- -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 115919 | 0.69 | 0.714463 |
Target: 5'- uGGggUaCGAGUCGGCCaCGggcCCGUGCu -3' miRNA: 3'- -UCaaGaGCUCAGUCGG-GCa--GGCACGc -5' |
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25969 | 3' | -56.6 | NC_005337.1 | + | 45544 | 0.68 | 0.763073 |
Target: 5'- cGGUgCUgGAGUCGGCgCCG-CCGUGg- -3' miRNA: 3'- -UCAaGAgCUCAGUCG-GGCaGGCACgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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