Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25969 | 5' | -58.9 | NC_005337.1 | + | 94865 | 0.68 | 0.647856 |
Target: 5'- cCCGCGCGugUcgaacagcGCCUccggaaaccgcucgCCCGAGUUCa- -3' miRNA: 3'- aGGCGUGCugG--------CGGA--------------GGGCUCAAGag -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 98418 | 0.72 | 0.446898 |
Target: 5'- uUCCGCGCGuCCGCC-CCCGcAGcgCa- -3' miRNA: 3'- -AGGCGUGCuGGCGGaGGGC-UCaaGag -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 47616 | 0.7 | 0.530271 |
Target: 5'- -gCGCGCGGCCGCgcugaaagccacgUUCCCGgAGUUCg- -3' miRNA: 3'- agGCGUGCUGGCG-------------GAGGGC-UCAAGag -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 69003 | 0.7 | 0.540997 |
Target: 5'- aUCCGCGCGAUCGCCgccgccgugUCCCGGa----- -3' miRNA: 3'- -AGGCGUGCUGGCGG---------AGGGCUcaagag -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 115636 | 0.7 | 0.560678 |
Target: 5'- gCgGCGCGGCCGCCaUCgCCGAGg---- -3' miRNA: 3'- aGgCGUGCUGGCGG-AG-GGCUCaagag -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 64567 | 0.7 | 0.560678 |
Target: 5'- aCCGCGUGGCCGCCa-CCGAcagUCUCg -3' miRNA: 3'- aGGCGUGCUGGCGGagGGCUca-AGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 103070 | 0.7 | 0.560678 |
Target: 5'- aUCCGCACGGCCGaCUUCgUGGag-CUCa -3' miRNA: 3'- -AGGCGUGCUGGC-GGAGgGCUcaaGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 7347 | 0.68 | 0.630741 |
Target: 5'- gUCCGCGC--CCGCCUCCagcAGcgUCUCg -3' miRNA: 3'- -AGGCGUGcuGGCGGAGGgc-UCa-AGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 77045 | 0.68 | 0.630741 |
Target: 5'- -gUGCACGGCCucguuaGCCg-CCGAGUUUUCg -3' miRNA: 3'- agGCGUGCUGG------CGGagGGCUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 9973 | 0.72 | 0.42046 |
Target: 5'- gCCGCGacgaGGCCGCgUCCUcggccacggcaGGGUUCUCg -3' miRNA: 3'- aGGCGUg---CUGGCGgAGGG-----------CUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 103523 | 0.73 | 0.378572 |
Target: 5'- uUCCGCACG-CUGCCgCCCGAGgagCg- -3' miRNA: 3'- -AGGCGUGCuGGCGGaGGGCUCaa-Gag -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 123605 | 0.74 | 0.35482 |
Target: 5'- gCCGCACGuGCCGCgCUCgCGGGUgcugacgCUCg -3' miRNA: 3'- aGGCGUGC-UGGCG-GAGgGCUCAa------GAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 133915 | 1.1 | 0.001217 |
Target: 5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3' miRNA: 3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 133976 | 1.1 | 0.001217 |
Target: 5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3' miRNA: 3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 134037 | 1.1 | 0.001217 |
Target: 5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3' miRNA: 3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 134098 | 1.1 | 0.001217 |
Target: 5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3' miRNA: 3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 134159 | 1.1 | 0.001217 |
Target: 5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3' miRNA: 3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 134212 | 1.1 | 0.001217 |
Target: 5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3' miRNA: 3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 134273 | 1 | 0.006274 |
Target: 5'- gUCCGCACGACCGCCUCCCGAGUUC-- -3' miRNA: 3'- -AGGCGUGCUGGCGGAGGGCUCAAGag -5' |
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25969 | 5' | -58.9 | NC_005337.1 | + | 59358 | 0.88 | 0.041867 |
Target: 5'- -gUGCGCGGCCGCCUCCgGAGUUCUUa -3' miRNA: 3'- agGCGUGCUGGCGGAGGgCUCAAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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