miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25975 5' -60.5 NC_005340.1 + 6396 0.66 0.299136
Target:  5'- uCAGCGCCGuCGGUcaggucgauagugGUCugCaGCCAGg -3'
miRNA:   3'- cGUCGCGGU-GUCG-------------CAGugGcCGGUCa -5'
25975 5' -60.5 NC_005340.1 + 18880 0.66 0.284307
Target:  5'- aGCGGCGauaAUGGCGUUaauccccaugacaACCGGCCAc- -3'
miRNA:   3'- -CGUCGCgg-UGUCGCAG-------------UGGCCGGUca -5'
25975 5' -60.5 NC_005340.1 + 6274 0.66 0.263847
Target:  5'- gGUGGCgcuuGCCGCAcuGCGUCugCGcgauGCCGGUg -3'
miRNA:   3'- -CGUCG----CGGUGU--CGCAGugGC----CGGUCA- -5'
25975 5' -60.5 NC_005340.1 + 20332 0.67 0.250443
Target:  5'- cCAGCcaaGCCACAGCGUCagcACCGccccGCgCAGg -3'
miRNA:   3'- cGUCG---CGGUGUCGCAG---UGGC----CG-GUCa -5'
25975 5' -60.5 NC_005340.1 + 6227 0.68 0.202378
Target:  5'- cCAGCGCgC-CAGCGauaUCACCGGCaucaAGa -3'
miRNA:   3'- cGUCGCG-GuGUCGC---AGUGGCCGg---UCa -5'
25975 5' -60.5 NC_005340.1 + 2140 0.69 0.181487
Target:  5'- aGCAGCgGgCGCAGCGcUACCuaugaGGCCAGc -3'
miRNA:   3'- -CGUCG-CgGUGUCGCaGUGG-----CCGGUCa -5'
25975 5' -60.5 NC_005340.1 + 18296 0.69 0.176571
Target:  5'- aGCAGCGCCGCc-CGUC-CCaGCCAu- -3'
miRNA:   3'- -CGUCGCGGUGucGCAGuGGcCGGUca -5'
25975 5' -60.5 NC_005340.1 + 10277 0.69 0.17512
Target:  5'- -uGGUGCCGCcuuucugcaccucaAGCGUCGCCGucGUCAGUu -3'
miRNA:   3'- cgUCGCGGUG--------------UCGCAGUGGC--CGGUCA- -5'
25975 5' -60.5 NC_005340.1 + 16366 0.69 0.167094
Target:  5'- cGCAGCGgCACAGCaUCAgCGcCCGGg -3'
miRNA:   3'- -CGUCGCgGUGUCGcAGUgGCcGGUCa -5'
25975 5' -60.5 NC_005340.1 + 17744 0.72 0.10949
Target:  5'- gGCAGCGCCugcuGCGGCcauGUUACCGGCaAGc -3'
miRNA:   3'- -CGUCGCGG----UGUCG---CAGUGGCCGgUCa -5'
25975 5' -60.5 NC_005340.1 + 20986 0.75 0.06494
Target:  5'- uCAGCGCCAgcacguuauCGGCcUCACCGGCCAu- -3'
miRNA:   3'- cGUCGCGGU---------GUCGcAGUGGCCGGUca -5'
25975 5' -60.5 NC_005340.1 + 918 1.08 0.000146
Target:  5'- aGCAGCGCCACAGCGUCACCGGCCAGUu -3'
miRNA:   3'- -CGUCGCGGUGUCGCAGUGGCCGGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.