miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25978 5' -50.9 NC_005340.1 + 9256 0.66 0.7774
Target:  5'- cUGUCAcCGGCGGCGcgucggcaaaugGCGGCugacauuGCAAAa -3'
miRNA:   3'- aACAGUaGCCGUUGU------------UGCCG-------CGUUUc -5'
25978 5' -50.9 NC_005340.1 + 2519 0.66 0.767484
Target:  5'- --aUgGUCGGCGA--ACGGgGCGAAGu -3'
miRNA:   3'- aacAgUAGCCGUUguUGCCgCGUUUC- -5'
25978 5' -50.9 NC_005340.1 + 3922 0.66 0.760797
Target:  5'- -cG-CAUCGGCGucgagggugauaccuGCGACGgGCGCAu-- -3'
miRNA:   3'- aaCaGUAGCCGU---------------UGUUGC-CGCGUuuc -5'
25978 5' -50.9 NC_005340.1 + 9188 0.66 0.744981
Target:  5'- -cGUCAcuggcUCaGGCAGCggUGGCuCAGGGg -3'
miRNA:   3'- aaCAGU-----AG-CCGUUGuuGCCGcGUUUC- -5'
25978 5' -50.9 NC_005340.1 + 28186 0.67 0.71024
Target:  5'- cUG-UAUCaGCAugGGCGGCGCGc-- -3'
miRNA:   3'- aACaGUAGcCGUugUUGCCGCGUuuc -5'
25978 5' -50.9 NC_005340.1 + 17715 0.67 0.686595
Target:  5'- -cGggGUCGGUAuuGCGACGGCGgGAAc -3'
miRNA:   3'- aaCagUAGCCGU--UGUUGCCGCgUUUc -5'
25978 5' -50.9 NC_005340.1 + 16055 0.67 0.686595
Target:  5'- --uUUAUCGGUGAUAcGCuGGCGCAGGGu -3'
miRNA:   3'- aacAGUAGCCGUUGU-UG-CCGCGUUUC- -5'
25978 5' -50.9 NC_005340.1 + 24980 0.68 0.650696
Target:  5'- gUUGUCAuuaUCGGCAAUGGCGcugcauGCGCGu-- -3'
miRNA:   3'- -AACAGU---AGCCGUUGUUGC------CGCGUuuc -5'
25978 5' -50.9 NC_005340.1 + 28371 0.68 0.650696
Target:  5'- -cGUCAgCGGCaucAugGACGGCgGCAAAc -3'
miRNA:   3'- aaCAGUaGCCG---UugUUGCCG-CGUUUc -5'
25978 5' -50.9 NC_005340.1 + 17570 0.68 0.63867
Target:  5'- ---cCAUCaGCGaaACGACGGCGCAGc- -3'
miRNA:   3'- aacaGUAGcCGU--UGUUGCCGCGUUuc -5'
25978 5' -50.9 NC_005340.1 + 6138 0.68 0.63867
Target:  5'- ---aCAcCGGCGACccACGGCGCAuAGa -3'
miRNA:   3'- aacaGUaGCCGUUGu-UGCCGCGUuUC- -5'
25978 5' -50.9 NC_005340.1 + 10313 0.71 0.452927
Target:  5'- -gGUCAcggCGGCGuACAACGGgGCGGGa -3'
miRNA:   3'- aaCAGUa--GCCGU-UGUUGCCgCGUUUc -5'
25978 5' -50.9 NC_005340.1 + 27698 0.72 0.381054
Target:  5'- -gGUCAUCaGCucGCAGCGGCGUAu-- -3'
miRNA:   3'- aaCAGUAGcCGu-UGUUGCCGCGUuuc -5'
25978 5' -50.9 NC_005340.1 + 21843 0.73 0.343546
Target:  5'- -aGcCAUUGGCGACAAagUGGCgGCAGAGg -3'
miRNA:   3'- aaCaGUAGCCGUUGUU--GCCG-CGUUUC- -5'
25978 5' -50.9 NC_005340.1 + 16822 0.74 0.300506
Target:  5'- -cGUCAgucUGGCGGCggUGGCGCAGu- -3'
miRNA:   3'- aaCAGUa--GCCGUUGuuGCCGCGUUuc -5'
25978 5' -50.9 NC_005340.1 + 3090 1.06 0.001727
Target:  5'- aUUGUCAUCGGCAACAACGGCGCAAAGc -3'
miRNA:   3'- -AACAGUAGCCGUUGUUGCCGCGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.