miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25983 3' -58.7 NC_005340.1 + 27960 0.66 0.364419
Target:  5'- uGUGCCaAUGCGgcguUCCGUCgugauGAGGCUcGGCa -3'
miRNA:   3'- gUACGG-UGCGU----AGGCGG-----CUCCGA-CUG- -5'
25983 3' -58.7 NC_005340.1 + 1597 0.66 0.363532
Target:  5'- --cGCgGCGCAaugggauUCCucGCCGAcaaGGCUGAUg -3'
miRNA:   3'- guaCGgUGCGU-------AGG--CGGCU---CCGACUG- -5'
25983 3' -58.7 NC_005340.1 + 9817 0.66 0.346105
Target:  5'- uGUGCCGCGUacaaagcggcgggAUCCagacugcaugGCUGAacuGGCUGACc -3'
miRNA:   3'- gUACGGUGCG-------------UAGG----------CGGCU---CCGACUG- -5'
25983 3' -58.7 NC_005340.1 + 24814 0.66 0.330111
Target:  5'- -cUGCCAUGCGUaCCGgucaaCGA-GCUGGCa -3'
miRNA:   3'- guACGGUGCGUA-GGCg----GCUcCGACUG- -5'
25983 3' -58.7 NC_005340.1 + 4531 0.66 0.321914
Target:  5'- uCAUGCaggCGCGCAUCguCGCUGAccuguuuacGGCUGAa -3'
miRNA:   3'- -GUACG---GUGCGUAG--GCGGCU---------CCGACUg -5'
25983 3' -58.7 NC_005340.1 + 1107 0.66 0.321914
Target:  5'- aAUGgUACGag-CCGCCGgucagcuucuccGGGCUGGCa -3'
miRNA:   3'- gUACgGUGCguaGGCGGC------------UCCGACUG- -5'
25983 3' -58.7 NC_005340.1 + 21585 0.67 0.309118
Target:  5'- -cUGCCGC-CAauuugCCGCCaucgcuaauaaaaaaGGGGCUGGCa -3'
miRNA:   3'- guACGGUGcGUa----GGCGG---------------CUCCGACUG- -5'
25983 3' -58.7 NC_005340.1 + 5970 0.67 0.283225
Target:  5'- --cGCCAUGCAaCCGCCuauGGCaGAUg -3'
miRNA:   3'- guaCGGUGCGUaGGCGGcu-CCGaCUG- -5'
25983 3' -58.7 NC_005340.1 + 28245 0.69 0.231602
Target:  5'- uGUGCCAgCGCG-CCGCCcaugcugauacagcgGGGGCUGuCu -3'
miRNA:   3'- gUACGGU-GCGUaGGCGG---------------CUCCGACuG- -5'
25983 3' -58.7 NC_005340.1 + 9261 0.69 0.217031
Target:  5'- aCcgGCgGCGCGUCgGCaaauGGcGGCUGACa -3'
miRNA:   3'- -GuaCGgUGCGUAGgCGg---CU-CCGACUG- -5'
25983 3' -58.7 NC_005340.1 + 15266 0.74 0.09221
Target:  5'- --aGCCGCGUAUUCuugggguGCCGGGGCUGGa -3'
miRNA:   3'- guaCGGUGCGUAGG-------CGGCUCCGACUg -5'
25983 3' -58.7 NC_005340.1 + 9309 0.77 0.055842
Target:  5'- -uUGCCgACGCG-CCGCCGgugacAGGCUGGCa -3'
miRNA:   3'- guACGG-UGCGUaGGCGGC-----UCCGACUG- -5'
25983 3' -58.7 NC_005340.1 + 10056 1.1 0.000155
Target:  5'- aCAUGCCACGCAUCCGCCGAGGCUGACg -3'
miRNA:   3'- -GUACGGUGCGUAGGCGGCUCCGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.