miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25983 5' -50.9 NC_005340.1 + 6645 0.66 0.780888
Target:  5'- -uGAAcgcUCCCCgagccgGGCGGCACGccggucAAAGCg -3'
miRNA:   3'- cuCUUuu-AGGGG------CCGUCGUGC------UUUCG- -5'
25983 5' -50.9 NC_005340.1 + 30001 0.67 0.690189
Target:  5'- -------aCCCCGcCGGCACuGAAAGCg -3'
miRNA:   3'- cucuuuuaGGGGCcGUCGUG-CUUUCG- -5'
25983 5' -50.9 NC_005340.1 + 28102 0.68 0.678407
Target:  5'- ------uUCUCCGGgucgauagccuCAGCAUGAAAGCg -3'
miRNA:   3'- cucuuuuAGGGGCC-----------GUCGUGCUUUCG- -5'
25983 5' -50.9 NC_005340.1 + 17749 0.69 0.618992
Target:  5'- -------aCCCCGGCAGCGCcugcuGCg -3'
miRNA:   3'- cucuuuuaGGGGCCGUCGUGcuuu-CG- -5'
25983 5' -50.9 NC_005340.1 + 9252 0.7 0.536655
Target:  5'- cAGccuGUCaCCGGCGGCGCGucGGCa -3'
miRNA:   3'- cUCuuuUAGgGGCCGUCGUGCuuUCG- -5'
25983 5' -50.9 NC_005340.1 + 28171 0.7 0.529747
Target:  5'- aAGAGAcagCCCCcgcuguaucagcaugGGCGGCGCGcuGGCa -3'
miRNA:   3'- cUCUUUua-GGGG---------------CCGUCGUGCuuUCG- -5'
25983 5' -50.9 NC_005340.1 + 2426 0.71 0.480206
Target:  5'- -cGAAA--CCaCCGGCGGCGCGAGuacgacacauccGGCa -3'
miRNA:   3'- cuCUUUuaGG-GGCCGUCGUGCUU------------UCG- -5'
25983 5' -50.9 NC_005340.1 + 5354 0.71 0.480206
Target:  5'- -uGAAg--CCCCGGC-GCGCGugauGAGCa -3'
miRNA:   3'- cuCUUuuaGGGGCCGuCGUGCu---UUCG- -5'
25983 5' -50.9 NC_005340.1 + 10012 1.13 0.000641
Target:  5'- gGAGAAAAUCCCCGGCAGCACGAAAGCa -3'
miRNA:   3'- -CUCUUUUAGGGGCCGUCGUGCUUUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.