miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25985 5' -51.5 NC_005340.1 + 10078 0.66 0.77301
Target:  5'- gACGGucagcGGCAUCaagACUGCCGAUGu- -3'
miRNA:   3'- gUGCCuaa--UCGUAG---UGGCGGCUAUca -5'
25985 5' -51.5 NC_005340.1 + 5716 0.67 0.705499
Target:  5'- uUAUGGAUgagAGC--CACCGCCGAa--- -3'
miRNA:   3'- -GUGCCUAa--UCGuaGUGGCGGCUauca -5'
25985 5' -51.5 NC_005340.1 + 28294 0.67 0.675135
Target:  5'- uCACGGuagaccgucaccGGCG-CACCGCCGAUAa- -3'
miRNA:   3'- -GUGCCuaa---------UCGUaGUGGCGGCUAUca -5'
25985 5' -51.5 NC_005340.1 + 6 0.67 0.67043
Target:  5'- gGCGGGgaaAGCAUUGCgCGCCagcGGUGGUg -3'
miRNA:   3'- gUGCCUaa-UCGUAGUG-GCGG---CUAUCA- -5'
25985 5' -51.5 NC_005340.1 + 2490 0.69 0.587734
Target:  5'- -cCGGAUgugucGUAcucgCGCCGCCGGUGGUu -3'
miRNA:   3'- guGCCUAau---CGUa---GUGGCGGCUAUCA- -5'
25985 5' -51.5 NC_005340.1 + 18737 0.74 0.2864
Target:  5'- aGCGGAaacuaucGGCAUUAUCGCCGGUGGc -3'
miRNA:   3'- gUGCCUaa-----UCGUAGUGGCGGCUAUCa -5'
25985 5' -51.5 NC_005340.1 + 13184 1.07 0.001513
Target:  5'- cCACGGAUUAGCAUCACCGCCGAUAGUc -3'
miRNA:   3'- -GUGCCUAAUCGUAGUGGCGGCUAUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.