miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25986 3' -51.6 NC_005340.1 + 494 0.66 0.749639
Target:  5'- cCACUGaGCGAggUCGCCACaaagGAUGa -3'
miRNA:   3'- cGUGAC-CGUUaaGGUGGUGga--CUACa -5'
25986 3' -51.6 NC_005340.1 + 13864 0.66 0.710795
Target:  5'- uCGCUGGCuguacagaugCCACC-CCUGAUcGUc -3'
miRNA:   3'- cGUGACCGuuaa------GGUGGuGGACUA-CA- -5'
25986 3' -51.6 NC_005340.1 + 17637 0.66 0.703816
Target:  5'- aCGCUGGCGAUUaagCugCGCCgucguuucgcUGAUGg -3'
miRNA:   3'- cGUGACCGUUAAg--GugGUGG----------ACUACa -5'
25986 3' -51.6 NC_005340.1 + 27833 0.67 0.69212
Target:  5'- cGgGCUGGCGccGUUCCAUUugCUGuuacgGUa -3'
miRNA:   3'- -CgUGACCGU--UAAGGUGGugGACua---CA- -5'
25986 3' -51.6 NC_005340.1 + 6699 0.68 0.609114
Target:  5'- aGCgACcGGCG--UCCACCgcccaACCUGAUGa -3'
miRNA:   3'- -CG-UGaCCGUuaAGGUGG-----UGGACUACa -5'
25986 3' -51.6 NC_005340.1 + 1630 0.68 0.573637
Target:  5'- cGCGCUGGCGGguaaugUCUACC--UUGAUGa -3'
miRNA:   3'- -CGUGACCGUUa-----AGGUGGugGACUACa -5'
25986 3' -51.6 NC_005340.1 + 7377 0.69 0.550249
Target:  5'- gGCAC-GGCAAUUgaGCUGCCgGAUGUg -3'
miRNA:   3'- -CGUGaCCGUUAAggUGGUGGaCUACA- -5'
25986 3' -51.6 NC_005340.1 + 28812 0.69 0.527162
Target:  5'- aGCcggGGCGAagcCCugCACCUGAUGg -3'
miRNA:   3'- -CGugaCCGUUaa-GGugGUGGACUACa -5'
25986 3' -51.6 NC_005340.1 + 6981 0.72 0.387548
Target:  5'- cGCAUUGGU--UUCCGCCAugccgguUCUGAUGg -3'
miRNA:   3'- -CGUGACCGuuAAGGUGGU-------GGACUACa -5'
25986 3' -51.6 NC_005340.1 + 12317 0.73 0.341913
Target:  5'- gGCACcGGCAGUuuUCCACCGCCg----- -3'
miRNA:   3'- -CGUGaCCGUUA--AGGUGGUGGacuaca -5'
25986 3' -51.6 NC_005340.1 + 5456 0.75 0.247091
Target:  5'- uGCACUGGUGAUggaugCCACCaacaACCUGAUu- -3'
miRNA:   3'- -CGUGACCGUUAa----GGUGG----UGGACUAca -5'
25986 3' -51.6 NC_005340.1 + 7733 0.83 0.074869
Target:  5'- gGCGCugaaUGGCGAuUUCCACCACCUGAUa- -3'
miRNA:   3'- -CGUG----ACCGUU-AAGGUGGUGGACUAca -5'
25986 3' -51.6 NC_005340.1 + 13412 1.1 0.000896
Target:  5'- aGCACUGGCAAUUCCACCACCUGAUGUu -3'
miRNA:   3'- -CGUGACCGUUAAGGUGGUGGACUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.