Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25988 | 5' | -52.9 | NC_005340.1 | + | 9273 | 0.71 | 0.375695 |
Target: 5'- aCCGGUAAGGCGCuccuGCaGCGCGGUuaacUCa -3' miRNA: 3'- -GGUCGUUUUGCGu---CGcCGUGUCGu---AG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 27694 | 0.71 | 0.366324 |
Target: 5'- aUCAGCu---CGCAGCGGCguaucGCAGgGUUa -3' miRNA: 3'- -GGUCGuuuuGCGUCGCCG-----UGUCgUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 17600 | 0.71 | 0.357115 |
Target: 5'- gCCAGCGuGAgGCAcUGGCGC-GCGUCa -3' miRNA: 3'- -GGUCGUuUUgCGUcGCCGUGuCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 6340 | 0.71 | 0.34807 |
Target: 5'- aCCGGCAucGCGCAGaCGcaGUGCGGCAa- -3' miRNA: 3'- -GGUCGUuuUGCGUC-GC--CGUGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 8850 | 0.72 | 0.325327 |
Target: 5'- gCAGCAuaucgggguuguuucGGA-GCuGCGGCACGGCGUUa -3' miRNA: 3'- gGUCGU---------------UUUgCGuCGCCGUGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 16823 | 0.72 | 0.321928 |
Target: 5'- gUCAGUcuGGCgGCGGUGGCGCAGUccgaaGUCg -3' miRNA: 3'- -GGUCGuuUUG-CGUCGCCGUGUCG-----UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 629 | 0.73 | 0.274122 |
Target: 5'- uCUGGUAAuacuUGCGGCGGaACAGCGUCg -3' miRNA: 3'- -GGUCGUUuu--GCGUCGCCgUGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 9490 | 0.73 | 0.266731 |
Target: 5'- aCCGGCAGgguacAGCGCA-UGGCGCGgguGCAUCa -3' miRNA: 3'- -GGUCGUU-----UUGCGUcGCCGUGU---CGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 8614 | 0.74 | 0.225733 |
Target: 5'- aCCGGCGcuGGCGCAgGCGGCGCGGg--- -3' miRNA: 3'- -GGUCGUu-UUGCGU-CGCCGUGUCguag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 2143 | 0.75 | 0.213304 |
Target: 5'- aCCAGCAGcgGGCGCAGCgcuaccuaugaGGC-CAGCcgCa -3' miRNA: 3'- -GGUCGUU--UUGCGUCG-----------CCGuGUCGuaG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 17572 | 0.75 | 0.201468 |
Target: 5'- aUCAGCGAAACGa--CGGCGCAGCuuaAUCg -3' miRNA: 3'- -GGUCGUUUUGCgucGCCGUGUCG---UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 1572 | 0.75 | 0.201467 |
Target: 5'- gCGGCAAAAguCGCAGCGGCuAUAGCc-- -3' miRNA: 3'- gGUCGUUUU--GCGUCGCCG-UGUCGuag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 16376 | 1.13 | 0.000341 |
Target: 5'- aCCAGCAAAACGCAGCGGCACAGCAUCa -3' miRNA: 3'- -GGUCGUUUUGCGUCGCCGUGUCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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