Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25989 | 3' | -62.1 | NC_005340.1 | + | 17492 | 0.66 | 0.247141 |
Target: 5'- aGCGCCAgCGCU-CCGaGCUGAUGCa- -3' miRNA: 3'- -CGCGGUgGCGGcGGUcUGACUGCGgc -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 17861 | 0.67 | 0.209799 |
Target: 5'- cGCGCCagcucggugacaauACCGCCGCUucuGCUGAUgaugcaGCCa -3' miRNA: 3'- -CGCGG--------------UGGCGGCGGuc-UGACUG------CGGc -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 18835 | 0.66 | 0.253551 |
Target: 5'- aCGCCAuuaUCGCCGCU--GCUGGCGUg- -3' miRNA: 3'- cGCGGU---GGCGGCGGucUGACUGCGgc -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 19308 | 0.71 | 0.104006 |
Target: 5'- uCGaCCagACCGCCGCCAGAaccaACGCCGc -3' miRNA: 3'- cGC-GG--UGGCGGCGGUCUgac-UGCGGC- -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 19454 | 0.71 | 0.119609 |
Target: 5'- aGCGCC-CCGCCGgugcgguaaCGGGCUGAUaaGCCu -3' miRNA: 3'- -CGCGGuGGCGGCg--------GUCUGACUG--CGGc -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 22239 | 0.67 | 0.205964 |
Target: 5'- -aGCUACCGgCGCCAGAUggagUGAgGCa- -3' miRNA: 3'- cgCGGUGGCgGCGGUCUG----ACUgCGgc -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 27484 | 0.67 | 0.211461 |
Target: 5'- cGCGCCAUgcaGCCGCaaugcgacgCAGACgaccACGCCa -3' miRNA: 3'- -CGCGGUGg--CGGCG---------GUCUGac--UGCGGc -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 27642 | 0.67 | 0.228713 |
Target: 5'- uGCGauaCGCCGCUGCgAG-CUGAUGaCCc -3' miRNA: 3'- -CGCg--GUGGCGGCGgUCuGACUGC-GGc -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 27844 | 0.67 | 0.211461 |
Target: 5'- uGCGUguCCGa---CGGGCUGGCGCCGu -3' miRNA: 3'- -CGCGguGGCggcgGUCUGACUGCGGC- -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 28315 | 0.74 | 0.06992 |
Target: 5'- uUGCCGCCGUCcaugauGCC--GCUGACGCCGg -3' miRNA: 3'- cGCGGUGGCGG------CGGucUGACUGCGGC- -5' |
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25989 | 3' | -62.1 | NC_005340.1 | + | 28907 | 0.66 | 0.273603 |
Target: 5'- aGCGCCAUCGCa-UCAGGCUaaaGCCa -3' miRNA: 3'- -CGCGGUGGCGgcGGUCUGAcugCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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