miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25990 5' -59.1 NC_005340.1 + 20993 0.65 0.405739
Target:  5'- aCCGUCGUCagcgccaGCAcguUAUCGGCCucaCCGGCc -3'
miRNA:   3'- -GGCGGCAG-------CGUu--AUGGCUGG---GGCCGu -5'
25990 5' -59.1 NC_005340.1 + 16232 0.66 0.387414
Target:  5'- aCCGCCGcCGCGAUAguuuUCGAgCUugcgggucaguuuCGGCAg -3'
miRNA:   3'- -GGCGGCaGCGUUAU----GGCUgGG-------------GCCGU- -5'
25990 5' -59.1 NC_005340.1 + 5331 0.66 0.378458
Target:  5'- -gGCUGgcuGCAaaaGUACCGcaaugaaGCCCCGGCGc -3'
miRNA:   3'- ggCGGCag-CGU---UAUGGC-------UGGGGCCGU- -5'
25990 5' -59.1 NC_005340.1 + 12258 0.67 0.312722
Target:  5'- aCCGCCcggcauggugGcCGCAGcaagcuUAgCGGCUCCGGCAg -3'
miRNA:   3'- -GGCGG----------CaGCGUU------AUgGCUGGGGCCGU- -5'
25990 5' -59.1 NC_005340.1 + 20533 0.67 0.311948
Target:  5'- aCCGCauaucgaccaGUCGCAGgaauCCGACgcgguauuucuuaCCCGGCu -3'
miRNA:   3'- -GGCGg---------CAGCGUUau--GGCUG-------------GGGCCGu -5'
25990 5' -59.1 NC_005340.1 + 20153 0.68 0.297515
Target:  5'- aUGCCGgUGCAAgACUGGCaCCGGCGu -3'
miRNA:   3'- gGCGGCaGCGUUaUGGCUGgGGCCGU- -5'
25990 5' -59.1 NC_005340.1 + 7098 0.69 0.242431
Target:  5'- gCGCUaUCGCGGUGuuGaaGCCaCCGGCAa -3'
miRNA:   3'- gGCGGcAGCGUUAUggC--UGG-GGCCGU- -5'
25990 5' -59.1 NC_005340.1 + 28317 0.7 0.21822
Target:  5'- gCCGCCGUC-CAugAUGCCGcugACgCCGGUg -3'
miRNA:   3'- -GGCGGCAGcGU--UAUGGC---UGgGGCCGu -5'
25990 5' -59.1 NC_005340.1 + 63 0.7 0.206908
Target:  5'- aCCGCUGgcgCGCAAUGCUuuCCCCGcCAc -3'
miRNA:   3'- -GGCGGCa--GCGUUAUGGcuGGGGCcGU- -5'
25990 5' -59.1 NC_005340.1 + 8198 0.71 0.175975
Target:  5'- gCGCUGgcCGUA--ACCGGCgCCCGGCAa -3'
miRNA:   3'- gGCGGCa-GCGUuaUGGCUG-GGGCCGU- -5'
25990 5' -59.1 NC_005340.1 + 5643 0.72 0.149226
Target:  5'- cCUGCUGUgCGC-GUGCCGuacuUCCCGGCGa -3'
miRNA:   3'- -GGCGGCA-GCGuUAUGGCu---GGGGCCGU- -5'
25990 5' -59.1 NC_005340.1 + 16853 0.73 0.137285
Target:  5'- aCGCCG-CGCAggGUACCGGCgUUCGGCu -3'
miRNA:   3'- gGCGGCaGCGU--UAUGGCUG-GGGCCGu -5'
25990 5' -59.1 NC_005340.1 + 17767 1.1 0.000192
Target:  5'- cCCGCCGUCGCAAUACCGACCCCGGCAg -3'
miRNA:   3'- -GGCGGCAGCGUUAUGGCUGGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.