miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25991 5' -53.8 NC_005340.1 + 14031 0.66 0.579687
Target:  5'- gGCGUgAuuuUCAGCuu-GGCGGCGGa-- -3'
miRNA:   3'- aCGUAgU---AGUCGucuUCGCCGCCaua -5'
25991 5' -53.8 NC_005340.1 + 4494 0.66 0.556285
Target:  5'- cUGCAUgAUguGCAuGAGGCGGUGa--- -3'
miRNA:   3'- -ACGUAgUAguCGU-CUUCGCCGCcaua -5'
25991 5' -53.8 NC_005340.1 + 16360 0.68 0.423993
Target:  5'- gGCAcagCAUCAGCGcccGggGCGGCGu--- -3'
miRNA:   3'- aCGUa--GUAGUCGU---CuuCGCCGCcaua -5'
25991 5' -53.8 NC_005340.1 + 17585 0.69 0.365244
Target:  5'- cGC-UCAUCAGCAGAcAGgGuGCGGg-- -3'
miRNA:   3'- aCGuAGUAGUCGUCU-UCgC-CGCCaua -5'
25991 5' -53.8 NC_005340.1 + 16817 0.73 0.206079
Target:  5'- cGCggCGUCAGUcu-GGCGGCGGUGg -3'
miRNA:   3'- aCGuaGUAGUCGucuUCGCCGCCAUa -5'
25991 5' -53.8 NC_005340.1 + 17934 1.05 0.000895
Target:  5'- cUGCAUCAUCAGCAGAAGCGGCGGUAUu -3'
miRNA:   3'- -ACGUAGUAGUCGUCUUCGCCGCCAUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.