Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25994 | 3' | -48.4 | NC_005340.1 | + | 15592 | 0.67 | 0.874585 |
Target: 5'- uAGACAG-GGuUUUGUGCCAGccGACa -3' miRNA: 3'- -UCUGUUaCCuAGACGCGGUCuuUUGg -5' |
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25994 | 3' | -48.4 | NC_005340.1 | + | 13403 | 0.67 | 0.847557 |
Target: 5'- cGGCGAUGGAUaUGCuCCGGGAuggcGACg -3' miRNA: 3'- uCUGUUACCUAgACGcGGUCUU----UUGg -5' |
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25994 | 3' | -48.4 | NC_005340.1 | + | 5259 | 0.69 | 0.786466 |
Target: 5'- uGACAAUGGcGUCacggaugcgGCGCUGGAAGuCCu -3' miRNA: 3'- uCUGUUACC-UAGa--------CGCGGUCUUUuGG- -5' |
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25994 | 3' | -48.4 | NC_005340.1 | + | 14693 | 0.7 | 0.706626 |
Target: 5'- -aACAggGUGGAuacaUCUGCGCCuGAcuGGCCg -3' miRNA: 3'- ucUGU--UACCU----AGACGCGGuCUu-UUGG- -5' |
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25994 | 3' | -48.4 | NC_005340.1 | + | 6961 | 0.7 | 0.692361 |
Target: 5'- cGACuaccgg-CUGCGCCAGAcuGCCg -3' miRNA: 3'- uCUGuuaccuaGACGCGGUCUuuUGG- -5' |
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25994 | 3' | -48.4 | NC_005340.1 | + | 6377 | 0.76 | 0.354558 |
Target: 5'- cGAUAGUGG-UCUGCaGCCAGGAAaggucgacagauucACCg -3' miRNA: 3'- uCUGUUACCuAGACG-CGGUCUUU--------------UGG- -5' |
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25994 | 3' | -48.4 | NC_005340.1 | + | 8710 | 0.77 | 0.348091 |
Target: 5'- aAGACGGcGGAuaUCUGCGCuCAGGucGCCu -3' miRNA: 3'- -UCUGUUaCCU--AGACGCG-GUCUuuUGG- -5' |
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25994 | 3' | -48.4 | NC_005340.1 | + | 24845 | 1.14 | 0.001037 |
Target: 5'- cAGACAAUGGAUCUGCGCCAGAAAACCa -3' miRNA: 3'- -UCUGUUACCUAGACGCGGUCUUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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