miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25999 3' -55.3 NC_005340.1 + 11987 0.66 0.534783
Target:  5'- aAGCCGGaAUgugC-CGGGCggGUCGCUg -3'
miRNA:   3'- cUCGGCUaUAa--GaGCCCGaaCGGCGG- -5'
25999 3' -55.3 NC_005340.1 + 1095 0.67 0.490901
Target:  5'- -cGCCGGUcagcUUCUcCGGGCUgGCaaaaaGCCu -3'
miRNA:   3'- cuCGGCUAu---AAGA-GCCCGAaCGg----CGG- -5'
25999 3' -55.3 NC_005340.1 + 9796 0.67 0.480189
Target:  5'- aGGUCGAUAccgcgCagGGGCUgUGCCGCg -3'
miRNA:   3'- cUCGGCUAUaa---GagCCCGA-ACGGCGg -5'
25999 3' -55.3 NC_005340.1 + 27862 0.67 0.469592
Target:  5'- aGGCCGGUuagguaGUUCUgcguguccgaCGGGCU-GgCGCCg -3'
miRNA:   3'- cUCGGCUA------UAAGA----------GCCCGAaCgGCGG- -5'
25999 3' -55.3 NC_005340.1 + 5780 0.67 0.468538
Target:  5'- cGAGUCGAUgaacaucgacuauGUggUCGaGGUUuaUGCCGCCg -3'
miRNA:   3'- -CUCGGCUA-------------UAagAGC-CCGA--ACGGCGG- -5'
25999 3' -55.3 NC_005340.1 + 19447 0.67 0.454959
Target:  5'- -cGCCGGUGcggUaaCGGGCUgauaagccugauaGCCGCCa -3'
miRNA:   3'- cuCGGCUAUa--AgaGCCCGAa------------CGGCGG- -5'
25999 3' -55.3 NC_005340.1 + 2087 0.67 0.448764
Target:  5'- -cGCCGAUAUcgCaUGGGCgaccaUGCaCGCCc -3'
miRNA:   3'- cuCGGCUAUAa-GaGCCCGa----ACG-GCGG- -5'
25999 3' -55.3 NC_005340.1 + 11633 0.69 0.33565
Target:  5'- -uGCCGGUAggCUCaucgccacuGGaGgUUGCCGCCg -3'
miRNA:   3'- cuCGGCUAUaaGAG---------CC-CgAACGGCGG- -5'
25999 3' -55.3 NC_005340.1 + 15265 0.7 0.318942
Target:  5'- aAGCCGcGUAUUCUUGGGg-UGCCGg- -3'
miRNA:   3'- cUCGGC-UAUAAGAGCCCgaACGGCgg -5'
25999 3' -55.3 NC_005340.1 + 19811 0.7 0.318942
Target:  5'- uGGCCGAUGagggcaGGGCgugGCCGCUg -3'
miRNA:   3'- cUCGGCUAUaagag-CCCGaa-CGGCGG- -5'
25999 3' -55.3 NC_005340.1 + 30351 0.71 0.279933
Target:  5'- uGAGCUaaGUAgUUUCGGGCUuuaauUGCUGCCg -3'
miRNA:   3'- -CUCGGc-UAUaAGAGCCCGA-----ACGGCGG- -5'
25999 3' -55.3 NC_005340.1 + 339 1.11 0.000333
Target:  5'- uGAGCCGAUAUUCUCGGGCUUGCCGCCc -3'
miRNA:   3'- -CUCGGCUAUAAGAGCCCGAACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.