Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25999 | 3' | -55.3 | NC_005340.1 | + | 11987 | 0.66 | 0.534783 |
Target: 5'- aAGCCGGaAUgugC-CGGGCggGUCGCUg -3' miRNA: 3'- cUCGGCUaUAa--GaGCCCGaaCGGCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 1095 | 0.67 | 0.490901 |
Target: 5'- -cGCCGGUcagcUUCUcCGGGCUgGCaaaaaGCCu -3' miRNA: 3'- cuCGGCUAu---AAGA-GCCCGAaCGg----CGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 27862 | 0.67 | 0.469592 |
Target: 5'- aGGCCGGUuagguaGUUCUgcguguccgaCGGGCU-GgCGCCg -3' miRNA: 3'- cUCGGCUA------UAAGA----------GCCCGAaCgGCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 19447 | 0.67 | 0.454959 |
Target: 5'- -cGCCGGUGcggUaaCGGGCUgauaagccugauaGCCGCCa -3' miRNA: 3'- cuCGGCUAUa--AgaGCCCGAa------------CGGCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 2087 | 0.67 | 0.448764 |
Target: 5'- -cGCCGAUAUcgCaUGGGCgaccaUGCaCGCCc -3' miRNA: 3'- cuCGGCUAUAa-GaGCCCGa----ACG-GCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 30351 | 0.71 | 0.279933 |
Target: 5'- uGAGCUaaGUAgUUUCGGGCUuuaauUGCUGCCg -3' miRNA: 3'- -CUCGGc-UAUaAGAGCCCGA-----ACGGCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 9796 | 0.67 | 0.480189 |
Target: 5'- aGGUCGAUAccgcgCagGGGCUgUGCCGCg -3' miRNA: 3'- cUCGGCUAUaa---GagCCCGA-ACGGCGg -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 5780 | 0.67 | 0.468538 |
Target: 5'- cGAGUCGAUgaacaucgacuauGUggUCGaGGUUuaUGCCGCCg -3' miRNA: 3'- -CUCGGCUA-------------UAagAGC-CCGA--ACGGCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 11633 | 0.69 | 0.33565 |
Target: 5'- -uGCCGGUAggCUCaucgccacuGGaGgUUGCCGCCg -3' miRNA: 3'- cuCGGCUAUaaGAG---------CC-CgAACGGCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 15265 | 0.7 | 0.318942 |
Target: 5'- aAGCCGcGUAUUCUUGGGg-UGCCGg- -3' miRNA: 3'- cUCGGC-UAUAAGAGCCCgaACGGCgg -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 19811 | 0.7 | 0.318942 |
Target: 5'- uGGCCGAUGagggcaGGGCgugGCCGCUg -3' miRNA: 3'- cUCGGCUAUaagag-CCCGaa-CGGCGG- -5' |
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25999 | 3' | -55.3 | NC_005340.1 | + | 339 | 1.11 | 0.000333 |
Target: 5'- uGAGCCGAUAUUCUCGGGCUUGCCGCCc -3' miRNA: 3'- -CUCGGCUAUAAGAGCCCGAACGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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