miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
260 5' -54.4 AC_000008.1 + 14552 0.66 0.607849
Target:  5'- aGCA----GGguAGGCCUGUCCuuCGCg -3'
miRNA:   3'- -CGUgauuUCguUCCGGACGGGugGUG- -5'
260 5' -54.4 AC_000008.1 + 17713 0.66 0.596263
Target:  5'- uGCACcguAGGaGGGGCaugGCCgGCCACg -3'
miRNA:   3'- -CGUGau-UUCgUUCCGga-CGGgUGGUG- -5'
260 5' -54.4 AC_000008.1 + 17651 0.66 0.58471
Target:  5'- cCGCUAAuGCcaGAGGCCagGCCaucUACCACc -3'
miRNA:   3'- cGUGAUUuCG--UUCCGGa-CGG---GUGGUG- -5'
260 5' -54.4 AC_000008.1 + 10105 0.66 0.58471
Target:  5'- cGCGCUc-GGCuaauauGGCCUGCUgCACCuGCg -3'
miRNA:   3'- -CGUGAuuUCGuu----CCGGACGG-GUGG-UG- -5'
260 5' -54.4 AC_000008.1 + 26004 0.66 0.573202
Target:  5'- aGC-CUGGGGCAuGGCCgaccGCCUGCgCAUu -3'
miRNA:   3'- -CGuGAUUUCGUuCCGGa---CGGGUG-GUG- -5'
260 5' -54.4 AC_000008.1 + 20352 0.67 0.550356
Target:  5'- uGCACg--GGCAAcagcucGGC--GCCCACCACc -3'
miRNA:   3'- -CGUGauuUCGUU------CCGgaCGGGUGGUG- -5'
260 5' -54.4 AC_000008.1 + 18136 0.67 0.516647
Target:  5'- cGCACgac-GCAugccgcccgucAGGCCgugGCCgGCCAUg -3'
miRNA:   3'- -CGUGauuuCGU-----------UCCGGa--CGGgUGGUG- -5'
260 5' -54.4 AC_000008.1 + 20429 0.67 0.505592
Target:  5'- cCACcAccGCAAugcuGGCCUGCgCUACCGCu -3'
miRNA:   3'- cGUGaUuuCGUU----CCGGACG-GGUGGUG- -5'
260 5' -54.4 AC_000008.1 + 11233 0.68 0.499008
Target:  5'- gGCACUucguuGAGCGAGGCgaUaucagguaugacagcGCCCuGCCGCa -3'
miRNA:   3'- -CGUGAu----UUCGUUCCGg-A---------------CGGG-UGGUG- -5'
260 5' -54.4 AC_000008.1 + 27216 0.68 0.451983
Target:  5'- cGCGCgc-AGCAccAGcuCCUGCCCGCgCGCg -3'
miRNA:   3'- -CGUGauuUCGU--UCc-GGACGGGUG-GUG- -5'
260 5' -54.4 AC_000008.1 + 22590 0.68 0.440606
Target:  5'- gGCGCcgauaucuUGAAGUcgcaguuGGGGCCUccGCCCugCGCg -3'
miRNA:   3'- -CGUG--------AUUUCG-------UUCCGGA--CGGGugGUG- -5'
260 5' -54.4 AC_000008.1 + 4481 0.69 0.401632
Target:  5'- uGCACgguuAGCGGGGCCUGUgaUugCAUg -3'
miRNA:   3'- -CGUGauu-UCGUUCCGGACGg-GugGUG- -5'
260 5' -54.4 AC_000008.1 + 15194 0.7 0.373184
Target:  5'- cGCGCUGAggccgaAGCAGcGGCCgaagcugccGCCC-CCGCu -3'
miRNA:   3'- -CGUGAUU------UCGUU-CCGGa--------CGGGuGGUG- -5'
260 5' -54.4 AC_000008.1 + 18293 0.7 0.337438
Target:  5'- cGCGCUGuuggcAGCAccaGGGuCCUGCCUccuucgcgaGCCACc -3'
miRNA:   3'- -CGUGAUu----UCGU---UCC-GGACGGG---------UGGUG- -5'
260 5' -54.4 AC_000008.1 + 10077 0.7 0.337438
Target:  5'- -gGCUGAAGCAGGGCUagGUCgGCgACa -3'
miRNA:   3'- cgUGAUUUCGUUCCGGa-CGGgUGgUG- -5'
260 5' -54.4 AC_000008.1 + 16736 0.71 0.320522
Target:  5'- aGgGCUuaAAAGUAGGGCCccUGUCCAgCACg -3'
miRNA:   3'- -CgUGA--UUUCGUUCCGG--ACGGGUgGUG- -5'
260 5' -54.4 AC_000008.1 + 13882 0.71 0.296354
Target:  5'- cGCGCaGGAGCAcagggacgugccAGGCCcgcGCCCGCCcACc -3'
miRNA:   3'- -CGUGaUUUCGU------------UCCGGa--CGGGUGG-UG- -5'
260 5' -54.4 AC_000008.1 + 25547 0.72 0.288619
Target:  5'- --cCUAGAGCGcucAGGaauCUUGCCCGCCACc -3'
miRNA:   3'- cguGAUUUCGU---UCC---GGACGGGUGGUG- -5'
260 5' -54.4 AC_000008.1 + 5391 0.72 0.273627
Target:  5'- uGCGCUGuuGCucGGCCgcUGCCCugCGu -3'
miRNA:   3'- -CGUGAUuuCGuuCCGG--ACGGGugGUg -5'
260 5' -54.4 AC_000008.1 + 5396 0.72 0.259265
Target:  5'- gGUGCUGAAGCGcuGCCggucuucGCCCugCGCg -3'
miRNA:   3'- -CGUGAUUUCGUucCGGa------CGGGugGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.