miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26000 5' -52.2 NC_005340.1 + 2513 0.66 0.749818
Target:  5'- cCCGUcccacaccgGCGACAGUGccGGAUguGUCGu -3'
miRNA:   3'- -GGCGa--------CGUUGUCGCuuUCUGguCAGC- -5'
26000 5' -52.2 NC_005340.1 + 28332 0.66 0.749818
Target:  5'- gCCGCUGaCGcCGGUGAcuGGGCUGGUUa -3'
miRNA:   3'- -GGCGAC-GUuGUCGCUu-UCUGGUCAGc -5'
26000 5' -52.2 NC_005340.1 + 9357 0.67 0.693368
Target:  5'- cCCGUaUGCcGCc-CGAAAGcGCCAGUCGg -3'
miRNA:   3'- -GGCG-ACGuUGucGCUUUC-UGGUCAGC- -5'
26000 5' -52.2 NC_005340.1 + 543 0.67 0.693368
Target:  5'- aCGCauUGCAucgcGCAGCGAuucGACguCAGUCGc -3'
miRNA:   3'- gGCG--ACGU----UGUCGCUuu-CUG--GUCAGC- -5'
26000 5' -52.2 NC_005340.1 + 3426 0.67 0.693368
Target:  5'- -gGCUGUAGCGGuUGAcgcgcGCCAGUCGc -3'
miRNA:   3'- ggCGACGUUGUC-GCUuuc--UGGUCAGC- -5'
26000 5' -52.2 NC_005340.1 + 18933 0.67 0.681824
Target:  5'- gCCGUcGguGCGGCGAuuguGGCCGGggCGu -3'
miRNA:   3'- -GGCGaCguUGUCGCUuu--CUGGUCa-GC- -5'
26000 5' -52.2 NC_005340.1 + 16209 0.67 0.681824
Target:  5'- -gGC-GCGGCAGCGAuuGACC--UCGg -3'
miRNA:   3'- ggCGaCGUUGUCGCUuuCUGGucAGC- -5'
26000 5' -52.2 NC_005340.1 + 11662 0.67 0.680667
Target:  5'- gCCGCcGCAAgGGCaugugccgagauuGAAAGaacGCCGGUCa -3'
miRNA:   3'- -GGCGaCGUUgUCG-------------CUUUC---UGGUCAGc -5'
26000 5' -52.2 NC_005340.1 + 20843 0.67 0.646924
Target:  5'- gCGCUGgAGCAccCGAAAGcaaaGCCGGUCa -3'
miRNA:   3'- gGCGACgUUGUc-GCUUUC----UGGUCAGc -5'
26000 5' -52.2 NC_005340.1 + 1278 0.68 0.588603
Target:  5'- uUCGCUGUuGCAGCGGguGAGguGCCAG-Ca -3'
miRNA:   3'- -GGCGACGuUGUCGCU--UUC--UGGUCaGc -5'
26000 5' -52.2 NC_005340.1 + 9137 0.69 0.542614
Target:  5'- aCCGCUGCcugagcCAGUGAcgcGcCCGGUCGa -3'
miRNA:   3'- -GGCGACGuu----GUCGCUuu-CuGGUCAGC- -5'
26000 5' -52.2 NC_005340.1 + 5351 0.7 0.508913
Target:  5'- aUC-CUGCAGCAGCGuauuuuuGGugCGGUCc -3'
miRNA:   3'- -GGcGACGUUGUCGCuu-----UCugGUCAGc -5'
26000 5' -52.2 NC_005340.1 + 5984 0.71 0.444419
Target:  5'- cCCGCUGC-GCGGCuuGAGAGGCCGa--- -3'
miRNA:   3'- -GGCGACGuUGUCG--CUUUCUGGUcagc -5'
26000 5' -52.2 NC_005340.1 + 9220 0.72 0.366098
Target:  5'- gCGCUGCAGgAGCGccuuACCGGUCu -3'
miRNA:   3'- gGCGACGUUgUCGCuuucUGGUCAGc -5'
26000 5' -52.2 NC_005340.1 + 3273 0.73 0.339283
Target:  5'- aCCaCUGCAACugguauuCGAAAGACUGGUCGa -3'
miRNA:   3'- -GGcGACGUUGuc-----GCUUUCUGGUCAGC- -5'
26000 5' -52.2 NC_005340.1 + 4337 0.81 0.109817
Target:  5'- cCCGCUGCAGC-GCuuuAAGGCCAGUCc -3'
miRNA:   3'- -GGCGACGUUGuCGcu-UUCUGGUCAGc -5'
26000 5' -52.2 NC_005340.1 + 1232 1.11 0.000794
Target:  5'- cCCGCUGCAACAGCGAAAGACCAGUCGc -3'
miRNA:   3'- -GGCGACGUUGUCGCUUUCUGGUCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.