Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26001 | 3' | -57 | NC_005340.1 | + | 2436 | 1.1 | 0.0003 |
Target: 5'- gGCGGCGCGAGUACGACACAUCCGGCAc -3' miRNA: 3'- -CGCCGCGCUCAUGCUGUGUAGGCCGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 7447 | 0.77 | 0.08608 |
Target: 5'- aCGG-GUGAagACGGCACAUCCGGCAg -3' miRNA: 3'- cGCCgCGCUcaUGCUGUGUAGGCCGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 28325 | 0.72 | 0.207809 |
Target: 5'- cGCGGCcucgguaucaGCGAG-ACGACGCAauUCaCGGUAg -3' miRNA: 3'- -CGCCG----------CGCUCaUGCUGUGU--AG-GCCGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 28199 | 0.71 | 0.231536 |
Target: 5'- gGCGGCGCGc---UGGCACAUCCGuCAg -3' miRNA: 3'- -CGCCGCGCucauGCUGUGUAGGCcGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 20270 | 0.69 | 0.324568 |
Target: 5'- cGCGGgGCG-GUGCuGACGCuguggcuuggCUGGCAg -3' miRNA: 3'- -CGCCgCGCuCAUG-CUGUGua--------GGCCGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 26156 | 0.69 | 0.324568 |
Target: 5'- aGCGGCGCGuauuugggauaaAGcccauCGAgGCAUCgCGGCGu -3' miRNA: 3'- -CGCCGCGC------------UCau---GCUgUGUAG-GCCGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 15785 | 0.67 | 0.407583 |
Target: 5'- cGCGGUGCGAguguaGUucucaaacagaaaaaGCGGguCAUCCGaGCAg -3' miRNA: 3'- -CGCCGCGCU-----CA---------------UGCUguGUAGGC-CGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 24350 | 0.67 | 0.413316 |
Target: 5'- cGUGGCGUuAGcgaGCGuCugGUCUGGCAa -3' miRNA: 3'- -CGCCGCGcUCa--UGCuGugUAGGCCGU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 8599 | 0.67 | 0.43278 |
Target: 5'- gGCGGCGCGGGUgugcagccuGCGcACAgCAUCaGGgAg -3' miRNA: 3'- -CGCCGCGCUCA---------UGC-UGU-GUAGgCCgU- -5' |
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26001 | 3' | -57 | NC_005340.1 | + | 27215 | 0.66 | 0.452768 |
Target: 5'- uCGGCGCG----UGACAUGUCCGGgAg -3' miRNA: 3'- cGCCGCGCucauGCUGUGUAGGCCgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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