miRNA: 3'- -CCAcACCC---UGCCCAGcauCGGUU--AGG- -5'
miRNA: 3'- cCACa--CCCu----GCCCAGCAUcGGUUAgg -5'
miRNA: 3'- -CCACACCCUGCCCAGCAUCGGUUAGG- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26001 | 5' | -54.6 | NC_005340.1 | + | 3909 | 0.66 | 0.637649 |
|
Target: 5'- aGGU-UGGGguuACGGGUCaacGCCAGuuUCCa -3' miRNA: 3'- -CCAcACCC---UGCCCAGcauCGGUU--AGG- -5' |
|||||||
| 26001 | 5' | -54.6 | NC_005340.1 | + | 11120 | 0.66 | 0.592207 |
|
Target: 5'- cGUGgcgGGGucuguCGGGUCGUA-CCAGUa- -3' miRNA: 3'- cCACa--CCCu----GCCCAGCAUcGGUUAgg -5' |
|||||||
| 26001 | 5' | -54.6 | NC_005340.1 | + | 2470 | 1.15 | 0.000232 |
|
Target: 5'- cGGUGUGGGACGGGUCGUAGCCAAUCCa -3' miRNA: 3'- -CCACACCCUGCCCAGCAUCGGUUAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home