Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26004 | 5' | -53.2 | NC_005340.1 | + | 1185 | 0.66 | 0.664433 |
Target: 5'- cGuuCACCuUCGGUGAGCcgGUGCc- -3' miRNA: 3'- aCugGUGGcAGUCGCUUGuaCACGuc -5' |
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26004 | 5' | -53.2 | NC_005340.1 | + | 10492 | 0.66 | 0.641054 |
Target: 5'- cGACCGgCGUCAGCaGAAUGUcGcGCAu -3' miRNA: 3'- aCUGGUgGCAGUCG-CUUGUA-CaCGUc -5' |
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26004 | 5' | -53.2 | NC_005340.1 | + | 28377 | 0.67 | 0.571066 |
Target: 5'- gGGCCGuuuguCCGUC-GCGAugAUuUGCAGg -3' miRNA: 3'- aCUGGU-----GGCAGuCGCUugUAcACGUC- -5' |
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26004 | 5' | -53.2 | NC_005340.1 | + | 28377 | 0.68 | 0.503062 |
Target: 5'- -cACCGgCGUCAGCGGcauCAUGgacgGCGGc -3' miRNA: 3'- acUGGUgGCAGUCGCUu--GUACa---CGUC- -5' |
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26004 | 5' | -53.2 | NC_005340.1 | + | 9864 | 0.69 | 0.448163 |
Target: 5'- cUGACCACCcgcgccgGUCGuucGCGGACAUG-GUGGg -3' miRNA: 3'- -ACUGGUGG-------CAGU---CGCUUGUACaCGUC- -5' |
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26004 | 5' | -53.2 | NC_005340.1 | + | 21402 | 0.7 | 0.42857 |
Target: 5'- ---gUACCGgcuaguGCGAGCAUGUGCAGc -3' miRNA: 3'- acugGUGGCagu---CGCUUGUACACGUC- -5' |
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26004 | 5' | -53.2 | NC_005340.1 | + | 4515 | 1.1 | 0.000636 |
Target: 5'- gUGACCACCGUCAGCGAACAUGUGCAGa -3' miRNA: 3'- -ACUGGUGGCAGUCGCUUGUACACGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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