Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26005 | 3' | -55.6 | NC_005340.1 | + | 4686 | 1.14 | 0.000167 |
Target: 5'- aGCCAGCCACGACGCACGAAAGCCAGCg -3' miRNA: 3'- -CGGUCGGUGCUGCGUGCUUUCGGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 14971 | 0.66 | 0.550312 |
Target: 5'- -aCAGCCAgCGAUGCA-GAu-GCCAcGCu -3' miRNA: 3'- cgGUCGGU-GCUGCGUgCUuuCGGU-CG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 28319 | 0.66 | 0.539153 |
Target: 5'- cGCCGuCCAUGAUGC-CGcuGAcGCCGGUg -3' miRNA: 3'- -CGGUcGGUGCUGCGuGC--UUuCGGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 20641 | 0.66 | 0.528071 |
Target: 5'- aGCCGGUagu-GCGC-UGAcGGCCAGCg -3' miRNA: 3'- -CGGUCGgugcUGCGuGCUuUCGGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 14281 | 0.66 | 0.495367 |
Target: 5'- cGCCGG-UGCGGCGCAUcuucaaucagagGAuGGCCAGg -3' miRNA: 3'- -CGGUCgGUGCUGCGUG------------CUuUCGGUCg -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 4475 | 0.68 | 0.393988 |
Target: 5'- gGUCAGCgACGAUGCGC----GCCuGCa -3' miRNA: 3'- -CGGUCGgUGCUGCGUGcuuuCGGuCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 12719 | 0.69 | 0.366292 |
Target: 5'- cGCUcGCaGCGACGC-CGAAAGCUgucaagacAGCg -3' miRNA: 3'- -CGGuCGgUGCUGCGuGCUUUCGG--------UCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 9249 | 0.69 | 0.331502 |
Target: 5'- uGCCAGCCugucacCGGCgGCGCGucGGCaaauGGCg -3' miRNA: 3'- -CGGUCGGu-----GCUG-CGUGCuuUCGg---UCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 17599 | 0.71 | 0.255411 |
Target: 5'- cGCCAGCgugaggCACuGGCGCGCGucaguGCgCAGCa -3' miRNA: 3'- -CGGUCG------GUG-CUGCGUGCuuu--CG-GUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 8150 | 0.72 | 0.241374 |
Target: 5'- cGCCGGUUACGGCcaGCGCGAgcacagucucgaaAAGCUGGUc -3' miRNA: 3'- -CGGUCGGUGCUG--CGUGCU-------------UUCGGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 12982 | 0.73 | 0.211118 |
Target: 5'- cGCUGGCCGCaACGC-CGAAAGCgguuaaAGCg -3' miRNA: 3'- -CGGUCGGUGcUGCGuGCUUUCGg-----UCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 20816 | 0.73 | 0.195881 |
Target: 5'- cGCCAGCCaaaagagaagcaccuGCGuGCGCugGAgcacccgaaagcaAAGCCGGUc -3' miRNA: 3'- -CGGUCGG---------------UGC-UGCGugCU-------------UUCGGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 16401 | 0.67 | 0.463614 |
Target: 5'- cGCCGGUguCGucACGCugGuAAGaaCCAGCa -3' miRNA: 3'- -CGGUCGguGC--UGCGugCuUUC--GGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 7241 | 0.68 | 0.403517 |
Target: 5'- uCCuGCa--GACGCGCGAccGaCCAGCg -3' miRNA: 3'- cGGuCGgugCUGCGUGCUuuC-GGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 15578 | 0.69 | 0.348587 |
Target: 5'- uGCCAGCCGacagucugguCGAUguaaGCACGcAGGCCgAGUg -3' miRNA: 3'- -CGGUCGGU----------GCUG----CGUGCuUUCGG-UCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 17355 | 0.7 | 0.322371 |
Target: 5'- gGCCAGUUGCG-CGCuugccuuACGAAAGCCGu- -3' miRNA: 3'- -CGGUCGGUGCuGCG-------UGCUUUCGGUcg -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 9322 | 0.7 | 0.31504 |
Target: 5'- uGUCAGCCGCcauuugccGACGCGCc---GCCGGUg -3' miRNA: 3'- -CGGUCGGUG--------CUGCGUGcuuuCGGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 11792 | 0.71 | 0.261629 |
Target: 5'- cGCCAGCCACGGCaGCAaauuuucCGGAcagguGUCAGg -3' miRNA: 3'- -CGGUCGGUGCUG-CGU-------GCUUu----CGGUCg -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 6145 | 0.72 | 0.235558 |
Target: 5'- aGCCAGCacaccggcgaccCACGGCGCAUaGAAcGgCAGCa -3' miRNA: 3'- -CGGUCG------------GUGCUGCGUG-CUUuCgGUCG- -5' |
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26005 | 3' | -55.6 | NC_005340.1 | + | 2814 | 0.66 | 0.550312 |
Target: 5'- aUCAGUCACaGCGCGCuc--GCCGGUg -3' miRNA: 3'- cGGUCGGUGcUGCGUGcuuuCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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