miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26007 3' -62.4 NC_005340.1 + 8192 0.66 0.282569
Target:  5'- gCCGuaacCGGCGCCCgGcaAUGaCGCCCa -3'
miRNA:   3'- gGGCu---GCCGUGGGgCa-UACgGCGGGc -5'
26007 3' -62.4 NC_005340.1 + 3436 0.66 0.275647
Target:  5'- gUUGACGcGCGCCaguCGcucaaucUGCCGCCCGa -3'
miRNA:   3'- gGGCUGC-CGUGGg--GCau-----ACGGCGGGC- -5'
26007 3' -62.4 NC_005340.1 + 10033 0.66 0.268862
Target:  5'- cCCCGACGGCGCUguuauggaGUAUgaGCCGgaaaCCGg -3'
miRNA:   3'- -GGGCUGCCGUGGgg------CAUA--CGGCg---GGC- -5'
26007 3' -62.4 NC_005340.1 + 433 0.66 0.268862
Target:  5'- aCCUGAUGGaCGCUcaCCGcGUGCCGUUCc -3'
miRNA:   3'- -GGGCUGCC-GUGG--GGCaUACGGCGGGc -5'
26007 3' -62.4 NC_005340.1 + 2433 0.67 0.236944
Target:  5'- aCCGGCGGCGCgaguacgacacaUCCGgcacUGUCGCCgGu -3'
miRNA:   3'- gGGCUGCCGUG------------GGGCau--ACGGCGGgC- -5'
26007 3' -62.4 NC_005340.1 + 19358 0.68 0.182628
Target:  5'- uUCUGGCGGCGgUCUGgucgAUGuuGCCUGa -3'
miRNA:   3'- -GGGCUGCCGUgGGGCa---UACggCGGGC- -5'
26007 3' -62.4 NC_005340.1 + 16288 0.69 0.17318
Target:  5'- cUCUGugGGCGCa--GUAcGCCGCCCc -3'
miRNA:   3'- -GGGCugCCGUGgggCAUaCGGCGGGc -5'
26007 3' -62.4 NC_005340.1 + 18326 0.7 0.130422
Target:  5'- gCCUGugGGCGCCUguagucuCGUuauaacagcagcGCCGCCCGu -3'
miRNA:   3'- -GGGCugCCGUGGG-------GCAua----------CGGCGGGC- -5'
26007 3' -62.4 NC_005340.1 + 6353 0.74 0.071468
Target:  5'- aCCGACGGCGCugacguuCCCGauaugGUGCgUGCCCGu -3'
miRNA:   3'- gGGCUGCCGUG-------GGGCa----UACG-GCGGGC- -5'
26007 3' -62.4 NC_005340.1 + 9345 1.1 0.000092
Target:  5'- aCCCGACGGCACCCCGUAUGCCGCCCGa -3'
miRNA:   3'- -GGGCUGCCGUGGGGCAUACGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.