Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 2973 | 0.66 | 0.174823 |
|
Target: 5'- aAGCuGCGCAaaGUCGCCUCGGGCaUGGc -3' miRNA: 3'- -UCG-CGCGUcgUGGCGGAGCCCGcGCU- -5' |
|||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 8335 | 0.67 | 0.14081 |
|
Target: 5'- cGUGCGCAGauuGCCGuUUUCGuGGCGCa- -3' miRNA: 3'- uCGCGCGUCg--UGGC-GGAGC-CCGCGcu -5' |
|||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 8661 | 0.68 | 0.122741 |
|
Target: 5'- --aGCGCAGauaucCGCCGUCUUgaGGGCGCGc -3' miRNA: 3'- ucgCGCGUC-----GUGGCGGAG--CCCGCGCu -5' |
|||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 6703 | 0.69 | 0.101045 |
|
Target: 5'- cGGCGUGCcGC-CCGgCUCGGGaGCGu -3' miRNA: 3'- -UCGCGCGuCGuGGCgGAGCCCgCGCu -5' |
|||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 25767 | 0.7 | 0.083001 |
|
Target: 5'- cGCGCGCucGCuguuuccauCCGCCUUGaGGCGCu- -3' miRNA: 3'- uCGCGCGu-CGu--------GGCGGAGC-CCGCGcu -5' |
|||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 3178 | 0.73 | 0.043891 |
|
Target: 5'- cGCGCGCAGCAgUGCCUCGcGGgaaaaguagaacguCGCGc -3' miRNA: 3'- uCGCGCGUCGUgGCGGAGC-CC--------------GCGCu -5' |
|||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 16293 | 0.78 | 0.019065 |
|
Target: 5'- uGgGCGCAGUacGCCGCCcCGGGCGCuGAu -3' miRNA: 3'- uCgCGCGUCG--UGGCGGaGCCCGCG-CU- -5' |
|||||||
| 26008 | 5' | -64.7 | NC_005340.1 | + | 11444 | 1.07 | 0.000069 |
|
Target: 5'- cAGCGCGCAGCACCGCCUCGGGCGCGAu -3' miRNA: 3'- -UCGCGCGUCGUGGCGGAGCCCGCGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home