miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26009 5' -53.8 NC_005340.1 + 19967 0.66 0.637354
Target:  5'- aUCACUGACGGCaAUGUUUGGcGAU-CUGa -3'
miRNA:   3'- -GGUGACUGUCG-UGCAGACU-CUGcGAC- -5'
26009 5' -53.8 NC_005340.1 + 12566 0.66 0.61421
Target:  5'- aCCAU--GCGGCAUGUCUGuGcACGCc- -3'
miRNA:   3'- -GGUGacUGUCGUGCAGACuC-UGCGac -5'
26009 5' -53.8 NC_005340.1 + 28182 0.66 0.602658
Target:  5'- cCCGCUGuauCAGCAUGggcGGcGCGCUGg -3'
miRNA:   3'- -GGUGACu--GUCGUGCagaCUcUGCGAC- -5'
26009 5' -53.8 NC_005340.1 + 4744 0.67 0.579649
Target:  5'- aCCGCUGGCuuucGUGCGUC---GugGCUGg -3'
miRNA:   3'- -GGUGACUGu---CGUGCAGacuCugCGAC- -5'
26009 5' -53.8 NC_005340.1 + 12539 0.67 0.545518
Target:  5'- uUAUUGuCAGCAgugucgaGUCUGuGGCGCUGu -3'
miRNA:   3'- gGUGACuGUCGUg------CAGACuCUGCGAC- -5'
26009 5' -53.8 NC_005340.1 + 7262 0.68 0.534279
Target:  5'- cCCACUauGCAGCGCGguuugucCUGcAGACGCg- -3'
miRNA:   3'- -GGUGAc-UGUCGUGCa------GAC-UCUGCGac -5'
26009 5' -53.8 NC_005340.1 + 12695 0.68 0.534279
Target:  5'- aCGCgacaGACAGCGaGUCUGAaACGCUc -3'
miRNA:   3'- gGUGa---CUGUCGUgCAGACUcUGCGAc -5'
26009 5' -53.8 NC_005340.1 + 9258 0.68 0.501092
Target:  5'- gUCACcGGCGGCGCGUCggcaaauGGCgGCUGa -3'
miRNA:   3'- -GGUGaCUGUCGUGCAGacu----CUG-CGAC- -5'
26009 5' -53.8 NC_005340.1 + 28275 0.69 0.437692
Target:  5'- cUCGCUGAUAccgaggccgcGCACgGUCUGAG-CGUUGa -3'
miRNA:   3'- -GGUGACUGU----------CGUG-CAGACUCuGCGAC- -5'
26009 5' -53.8 NC_005340.1 + 20490 0.7 0.388533
Target:  5'- -aACUGACGGCcaGCGUCgcgGAuuCGCUGa -3'
miRNA:   3'- ggUGACUGUCG--UGCAGa--CUcuGCGAC- -5'
26009 5' -53.8 NC_005340.1 + 123 0.72 0.286233
Target:  5'- gCGCgUG-UGGCGCGUCUGAGGCGUg- -3'
miRNA:   3'- gGUG-ACuGUCGUGCAGACUCUGCGac -5'
26009 5' -53.8 NC_005340.1 + 12829 0.91 0.013952
Target:  5'- gCCACUGACAGUGUGUCUGAGACGCUu -3'
miRNA:   3'- -GGUGACUGUCGUGCAGACUCUGCGAc -5'
26009 5' -53.8 NC_005340.1 + 12961 1 0.003404
Target:  5'- gCCACUGACAGCAC-UCUGAGACGCUGg -3'
miRNA:   3'- -GGUGACUGUCGUGcAGACUCUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.