miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26012 3' -48 NC_005340.1 + 2215 0.66 0.936374
Target:  5'- cGCGgcuGUCuGGAAUaCGACGCCGgggCAACc -3'
miRNA:   3'- -UGCag-UAG-CUUUA-GCUGUGGCa--GUUG- -5'
26012 3' -48 NC_005340.1 + 9088 0.66 0.924276
Target:  5'- uCGUCAaaGAGGUCGACGgCGcacugcaugUCAGCu -3'
miRNA:   3'- uGCAGUagCUUUAGCUGUgGC---------AGUUG- -5'
26012 3' -48 NC_005340.1 + 2662 0.66 0.923637
Target:  5'- cGCGUCugagcugGUCGAGGUCGAacagggugcagcCACCGgCAAg -3'
miRNA:   3'- -UGCAG-------UAGCUUUAGCU------------GUGGCaGUUg -5'
26012 3' -48 NC_005340.1 + 16696 0.67 0.880174
Target:  5'- uACGgcuggCAaUGAAAUUGACACCGUaAACc -3'
miRNA:   3'- -UGCa----GUaGCUUUAGCUGUGGCAgUUG- -5'
26012 3' -48 NC_005340.1 + 2785 0.68 0.871727
Target:  5'- ----uGUCGAuuUCGAUGCgGUCAGCa -3'
miRNA:   3'- ugcagUAGCUuuAGCUGUGgCAGUUG- -5'
26012 3' -48 NC_005340.1 + 7247 0.68 0.871727
Target:  5'- -gGUCAggUCGAugcagggCGACACCcUCGACg -3'
miRNA:   3'- ugCAGU--AGCUuua----GCUGUGGcAGUUG- -5'
26012 3' -48 NC_005340.1 + 16359 0.68 0.853953
Target:  5'- gACGaCAccggCGAAAUCGugGCgGUCGAg -3'
miRNA:   3'- -UGCaGUa---GCUUUAGCugUGgCAGUUg -5'
26012 3' -48 NC_005340.1 + 16403 0.68 0.835075
Target:  5'- cCGUCAUaaaGAAAUCGACGgCGgCGAg -3'
miRNA:   3'- uGCAGUAg--CUUUAGCUGUgGCaGUUg -5'
26012 3' -48 NC_005340.1 + 26161 0.69 0.819237
Target:  5'- cGCGUauuugggauaaagccCAUCGAGGcaucgcggcguuUUGGCugCGUCAGCa -3'
miRNA:   3'- -UGCA---------------GUAGCUUU------------AGCUGugGCAGUUG- -5'
26012 3' -48 NC_005340.1 + 28183 0.7 0.783661
Target:  5'- uCGUCAUCGGuuucaccAUCGAgagcauaACCGUCGAUg -3'
miRNA:   3'- uGCAGUAGCUu------UAGCUg------UGGCAGUUG- -5'
26012 3' -48 NC_005340.1 + 7201 0.73 0.596738
Target:  5'- -gGUCAUCaaugguGGuuUCGACGCUGUCGGCu -3'
miRNA:   3'- ugCAGUAG------CUuuAGCUGUGGCAGUUG- -5'
26012 3' -48 NC_005340.1 + 20720 0.74 0.514553
Target:  5'- aGCGUCAUuugUGGAAUgGGCuuaccgcugGCCGUCAGCg -3'
miRNA:   3'- -UGCAGUA---GCUUUAgCUG---------UGGCAGUUG- -5'
26012 3' -48 NC_005340.1 + 2830 0.77 0.367218
Target:  5'- cCG-CAUCGAAAUCGACAUCaGUCAcaGCg -3'
miRNA:   3'- uGCaGUAGCUUUAGCUGUGG-CAGU--UG- -5'
26012 3' -48 NC_005340.1 + 16506 1.12 0.002096
Target:  5'- gACGUCAUCGAAAUCGACACCGUCAACa -3'
miRNA:   3'- -UGCAGUAGCUUUAGCUGUGGCAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.