miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26014 5' -56.3 NC_005340.1 + 10072 0.66 0.509866
Target:  5'- uGCGCUgaCGGucaGCGGCAucaAGAC-UGCCGa -3'
miRNA:   3'- cCGCGA--GCUg--CGCCGU---UUUGcACGGC- -5'
26014 5' -56.3 NC_005340.1 + 6358 0.66 0.499171
Target:  5'- cGGCGCU-GACGUucccgauauGGU---GCGUGCCc -3'
miRNA:   3'- -CCGCGAgCUGCG---------CCGuuuUGCACGGc -5'
26014 5' -56.3 NC_005340.1 + 2781 0.66 0.492803
Target:  5'- uGCGCUgacggacaGugGCGGCAGauugucacuauugagGACGcccuUGCCGg -3'
miRNA:   3'- cCGCGAg-------CugCGCCGUU---------------UUGC----ACGGC- -5'
26014 5' -56.3 NC_005340.1 + 6276 0.66 0.478091
Target:  5'- uGGCGCUUGcCGCacuGCGucuGCGcgaUGCCGg -3'
miRNA:   3'- -CCGCGAGCuGCGc--CGUuu-UGC---ACGGC- -5'
26014 5' -56.3 NC_005340.1 + 27950 0.67 0.437312
Target:  5'- cGGCGUUCcgucgugaugaGGCuCGGCAAcACGUauGCCGa -3'
miRNA:   3'- -CCGCGAG-----------CUGcGCCGUUuUGCA--CGGC- -5'
26014 5' -56.3 NC_005340.1 + 2993 0.67 0.437312
Target:  5'- -aUGCUCuGCGCGGUguuGGAAUugGUGCCGa -3'
miRNA:   3'- ccGCGAGcUGCGCCG---UUUUG--CACGGC- -5'
26014 5' -56.3 NC_005340.1 + 11499 0.67 0.437312
Target:  5'- cGCGCcCGAgGCGGUGcuGCGcGCUGa -3'
miRNA:   3'- cCGCGaGCUgCGCCGUuuUGCaCGGC- -5'
26014 5' -56.3 NC_005340.1 + 10529 0.68 0.417685
Target:  5'- cGGCGCUC-AgGCuGCAAAucauggugGCGUGCUa -3'
miRNA:   3'- -CCGCGAGcUgCGcCGUUU--------UGCACGGc -5'
26014 5' -56.3 NC_005340.1 + 12503 0.68 0.408075
Target:  5'- aGgGCUCGGgGCGuGCAcAGACaUGCCGc -3'
miRNA:   3'- cCgCGAGCUgCGC-CGU-UUUGcACGGC- -5'
26014 5' -56.3 NC_005340.1 + 8612 0.68 0.408075
Target:  5'- cGGCGCU-GGCGCaGGCGgcgcGggUGUGCa- -3'
miRNA:   3'- -CCGCGAgCUGCG-CCGU----UuuGCACGgc -5'
26014 5' -56.3 NC_005340.1 + 8069 0.69 0.348247
Target:  5'- cGGUGCUauugacgauauccgGGCGgGGCGuauuGAGCGUGCUGu -3'
miRNA:   3'- -CCGCGAg-------------CUGCgCCGU----UUUGCACGGC- -5'
26014 5' -56.3 NC_005340.1 + 2161 0.69 0.333055
Target:  5'- cGGCG-UCGuauuccagacagcCGCGGCGAAugGUGUCu -3'
miRNA:   3'- -CCGCgAGCu------------GCGCCGUUUugCACGGc -5'
26014 5' -56.3 NC_005340.1 + 16367 0.72 0.227857
Target:  5'- cGGCGaaaUCGugGCGGuCGAGguggucauGCGUGgCCGu -3'
miRNA:   3'- -CCGCg--AGCugCGCC-GUUU--------UGCAC-GGC- -5'
26014 5' -56.3 NC_005340.1 + 27996 0.72 0.213526
Target:  5'- cGCGCUCGACGUcuucuGGCAAcaugaacauaagcAUGUGCCa -3'
miRNA:   3'- cCGCGAGCUGCG-----CCGUUu------------UGCACGGc -5'
26014 5' -56.3 NC_005340.1 + 9410 0.73 0.188219
Target:  5'- uGGCGCuuUCGG-GCGGCAuacGGgGUGCCGu -3'
miRNA:   3'- -CCGCG--AGCUgCGCCGUu--UUgCACGGC- -5'
26014 5' -56.3 NC_005340.1 + 29966 0.75 0.138173
Target:  5'- cGGCGUuugcuauggUCGACGUGGUGGcggugcguAAUGUGCCGg -3'
miRNA:   3'- -CCGCG---------AGCUGCGCCGUU--------UUGCACGGC- -5'
26014 5' -56.3 NC_005340.1 + 1414 0.78 0.079578
Target:  5'- cGGUGUcggUCGAUGCcuGCGGAACGUGCCGu -3'
miRNA:   3'- -CCGCG---AGCUGCGc-CGUUUUGCACGGC- -5'
26014 5' -56.3 NC_005340.1 + 17336 0.82 0.041292
Target:  5'- aGGCGCUUGACaaGGCAAAGCGcgaaGCCGg -3'
miRNA:   3'- -CCGCGAGCUGcgCCGUUUUGCa---CGGC- -5'
26014 5' -56.3 NC_005340.1 + 17420 1.1 0.000338
Target:  5'- aGGCGCUCGACGCGGCAAAACGUGCCGc -3'
miRNA:   3'- -CCGCGAGCUGCGCCGUUUUGCACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.