miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26015 5' -51.4 NC_005340.1 + 19722 0.66 0.745828
Target:  5'- cGGCGAgggggaaaccucaAUACAGCuugccgguacacuUUACCCUGCCa- -3'
miRNA:   3'- uUCGCU-------------UAUGUUGu------------AGUGGGACGGcc -5'
26015 5' -51.4 NC_005340.1 + 7192 0.66 0.744702
Target:  5'- uGGUGGuuuCGACgcugucggcuuuuuuGUCACCCUuGCCGGu -3'
miRNA:   3'- uUCGCUuauGUUG---------------UAGUGGGA-CGGCC- -5'
26015 5' -51.4 NC_005340.1 + 8594 0.66 0.717312
Target:  5'- cAGCGGAUGCccgagggugAGCcuUUGCCCgaUGCCGGa -3'
miRNA:   3'- uUCGCUUAUG---------UUGu-AGUGGG--ACGGCC- -5'
26015 5' -51.4 NC_005340.1 + 3243 0.67 0.70572
Target:  5'- -cGCGAAUACGguGCGcCAgUCCUGcCCGGu -3'
miRNA:   3'- uuCGCUUAUGU--UGUaGU-GGGAC-GGCC- -5'
26015 5' -51.4 NC_005340.1 + 9545 0.67 0.70572
Target:  5'- -cGCGccAUGCGcug-UACCCUGCCGGu -3'
miRNA:   3'- uuCGCu-UAUGUuguaGUGGGACGGCC- -5'
26015 5' -51.4 NC_005340.1 + 2350 0.67 0.658656
Target:  5'- -uGCGGAUGCcu--UCugCCUGCgCGGc -3'
miRNA:   3'- uuCGCUUAUGuuguAGugGGACG-GCC- -5'
26015 5' -51.4 NC_005340.1 + 14696 0.7 0.506428
Target:  5'- aGGGUGGAUACAucugCGCCUgacugGCCGGa -3'
miRNA:   3'- -UUCGCUUAUGUuguaGUGGGa----CGGCC- -5'
26015 5' -51.4 NC_005340.1 + 1675 0.7 0.495218
Target:  5'- cAGCG-GUGCGAcCAUCAgCCUUGUCGGc -3'
miRNA:   3'- uUCGCuUAUGUU-GUAGU-GGGACGGCC- -5'
26015 5' -51.4 NC_005340.1 + 23297 0.72 0.400144
Target:  5'- uGAGUuuGAAUGuaacauuacCGACAUUACuCCUGCCGGg -3'
miRNA:   3'- -UUCG--CUUAU---------GUUGUAGUG-GGACGGCC- -5'
26015 5' -51.4 NC_005340.1 + 2441 0.74 0.317548
Target:  5'- -cGCGAGUACGACA-CAUCCggcacugucGCCGGu -3'
miRNA:   3'- uuCGCUUAUGUUGUaGUGGGa--------CGGCC- -5'
26015 5' -51.4 NC_005340.1 + 19443 1.1 0.000966
Target:  5'- aAAGCGAAUACAACAUCACCCUGCCGGg -3'
miRNA:   3'- -UUCGCUUAUGUUGUAGUGGGACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.