miRNA: 3'- -AACG-GU----CCAUAACGUa-------------GUGCGACUUg -5'
miRNA: 3'- aaCGGUCCAUa-ACG--------UAGUGcGACUUG- -5'
miRNA: 3'- aaCGGuCCAUAacGUAGUGCGACUug -5'
miRNA: 3'- aACGGUCCAUaaCGUAGUGCGa-CUUG- -5'
miRNA: 3'- -AACGGUCCAUAACGUAGUGCGACUUG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26017 | 3' | -50.9 | NC_005340.1 | + | 6529 | 0.66 | 0.695785 |
|
Target: 5'- uUUGCgCAcaccGGUAUUGCGgucgagcugcaucgCGCGCUGAAa -3' miRNA: 3'- -AACG-GU----CCAUAACGUa-------------GUGCGACUUg -5' |
|||||||
| 26017 | 3' | -50.9 | NC_005340.1 | + | 5819 | 0.66 | 0.690985 |
|
Target: 5'- -cGCCGGGUGccUGCuggaaaacAUCACcCUGGGCg -3' miRNA: 3'- aaCGGUCCAUa-ACG--------UAGUGcGACUUG- -5' |
|||||||
| 26017 | 3' | -50.9 | NC_005340.1 | + | 16401 | 0.67 | 0.67894 |
|
Target: 5'- -cGCC-GGUGU--CGUCACGCUGGu- -3' miRNA: 3'- aaCGGuCCAUAacGUAGUGCGACUug -5' |
|||||||
| 26017 | 3' | -50.9 | NC_005340.1 | + | 19463 | 0.69 | 0.534043 |
|
Target: 5'- cUGCCGGGUG--GUGUUGCGCcgGGGCa -3' miRNA: 3'- aACGGUCCAUaaCGUAGUGCGa-CUUG- -5' |
|||||||
| 26017 | 3' | -50.9 | NC_005340.1 | + | 23888 | 1.07 | 0.001282 |
|
Target: 5'- aUUGCCAGGUAUUGCAUCACGCUGAACc -3' miRNA: 3'- -AACGGUCCAUAACGUAGUGCGACUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home