miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26019 5' -50.9 NC_005342.2 + 27283 0.66 0.906707
Target:  5'- gUCGcCACGAGCCggCGAaacCGAUGAUGc -3'
miRNA:   3'- -AGCaGUGCUUGGa-GCUgu-GCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 38861 0.66 0.906707
Target:  5'- gCGUUACGug-CUCGGCGgCGACAuuGCGc -3'
miRNA:   3'- aGCAGUGCuugGAGCUGU-GCUGU--UGC- -5'
26019 5' -50.9 NC_005342.2 + 18245 0.66 0.906707
Target:  5'- aCGUCGCaugGGGCUcgcauUCGGCgcugGCGGCAGCGc -3'
miRNA:   3'- aGCAGUG---CUUGG-----AGCUG----UGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 14234 0.66 0.906707
Target:  5'- -aGUCGCGAuCCaaaacaacacaaUCGGCACGuGCGACc -3'
miRNA:   3'- agCAGUGCUuGG------------AGCUGUGC-UGUUGc -5'
26019 5' -50.9 NC_005342.2 + 6179 0.66 0.906707
Target:  5'- cUCGUCGUGAAUCUCG-UACGAgucgcuuuCGGCGa -3'
miRNA:   3'- -AGCAGUGCUUGGAGCuGUGCU--------GUUGC- -5'
26019 5' -50.9 NC_005342.2 + 22854 0.66 0.902595
Target:  5'- uUUGUCGCGGcCCggcgaUCGGCGCGAUcguacuggcgcucguGACGa -3'
miRNA:   3'- -AGCAGUGCUuGG-----AGCUGUGCUG---------------UUGC- -5'
26019 5' -50.9 NC_005342.2 + 43885 0.66 0.899797
Target:  5'- cUGUCGCGccCgCUCGGCAagGGCGGCGc -3'
miRNA:   3'- aGCAGUGCuuG-GAGCUGUg-CUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 8400 0.66 0.899797
Target:  5'- uUCGUCuuGAAcacuuCCUgGAuCACGGCAGCc -3'
miRNA:   3'- -AGCAGugCUU-----GGAgCU-GUGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 10691 0.66 0.899797
Target:  5'- gCGUCgGCGAGCUgacGCACGAgCAGCGc -3'
miRNA:   3'- aGCAG-UGCUUGGagcUGUGCU-GUUGC- -5'
26019 5' -50.9 NC_005342.2 + 27851 0.67 0.895515
Target:  5'- aCGUCGCuGAGCUucaccggcccugcguUCGAgUACGGCGGCa -3'
miRNA:   3'- aGCAGUG-CUUGG---------------AGCU-GUGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 27672 0.67 0.892605
Target:  5'- -aGUCGCGcACCUgaACGCGcuGCAGCGa -3'
miRNA:   3'- agCAGUGCuUGGAgcUGUGC--UGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 20289 0.67 0.892605
Target:  5'- aUCGgugCAUauAACCUCGcCGCGACGugGu -3'
miRNA:   3'- -AGCa--GUGc-UUGGAGCuGUGCUGUugC- -5'
26019 5' -50.9 NC_005342.2 + 30808 0.67 0.892605
Target:  5'- aUCGgCGCGAaguuggccGCCauaUCGACGCGcACGACu -3'
miRNA:   3'- -AGCaGUGCU--------UGG---AGCUGUGC-UGUUGc -5'
26019 5' -50.9 NC_005342.2 + 10892 0.67 0.885138
Target:  5'- aCGUCGCGuAGCCagggCGACGCaGAUucgAGCGc -3'
miRNA:   3'- aGCAGUGC-UUGGa---GCUGUG-CUG---UUGC- -5'
26019 5' -50.9 NC_005342.2 + 23357 0.67 0.8774
Target:  5'- aUCGguacgagCGCGAACC-CGAC-CGGCGAg- -3'
miRNA:   3'- -AGCa------GUGCUUGGaGCUGuGCUGUUgc -5'
26019 5' -50.9 NC_005342.2 + 242 0.67 0.8774
Target:  5'- gUCGUCACGccGCCgagcaCGGuCACGGuCGACGu -3'
miRNA:   3'- -AGCAGUGCu-UGGa----GCU-GUGCU-GUUGC- -5'
26019 5' -50.9 NC_005342.2 + 23210 0.67 0.8774
Target:  5'- aUCGUCGCcgcguucguGAGCggcuuCUCGAC-CGAUGACGg -3'
miRNA:   3'- -AGCAGUG---------CUUG-----GAGCUGuGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 28732 0.67 0.8774
Target:  5'- gCGUCGCGugcgGCCa--GCACGAUGACGa -3'
miRNA:   3'- aGCAGUGCu---UGGagcUGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 16712 0.67 0.875027
Target:  5'- aUCGUCgACGAACUggUCGugACGcucgaacuagacgcGCGACa -3'
miRNA:   3'- -AGCAG-UGCUUGG--AGCugUGC--------------UGUUGc -5'
26019 5' -50.9 NC_005342.2 + 2460 0.67 0.868583
Target:  5'- uUCGUgACGAucgacgccGCCUCGaggucggGCGCGACGuACa -3'
miRNA:   3'- -AGCAgUGCU--------UGGAGC-------UGUGCUGU-UGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.