miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26020 5' -53.3 NC_005342.2 + 45238 0.66 0.799297
Target:  5'- gGCGgGGCGccCCGCAuUCGAGCGGUgguggucgcuuuGCGa -3'
miRNA:   3'- -CGCaCUGCu-GGUGU-AGCUUGCCG------------UGC- -5'
26020 5' -53.3 NC_005342.2 + 32663 0.66 0.799297
Target:  5'- -gGUaGGCGugCGCGUCGGGCaGCuuuGCGa -3'
miRNA:   3'- cgCA-CUGCugGUGUAGCUUGcCG---UGC- -5'
26020 5' -53.3 NC_005342.2 + 44954 0.66 0.799297
Target:  5'- -gGUGcCGACCuguccgGCAUCGAAgCGcGCAUGg -3'
miRNA:   3'- cgCACuGCUGG------UGUAGCUU-GC-CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 38543 0.66 0.799297
Target:  5'- aGCuuugGACGACCgacACGUCGGACacguaccgGGCGCc -3'
miRNA:   3'- -CGca--CUGCUGG---UGUAGCUUG--------CCGUGc -5'
26020 5' -53.3 NC_005342.2 + 26489 0.66 0.799297
Target:  5'- cGCGUGcCGcacGCCAuuucCGUCGAugaagucCGGCGCGc -3'
miRNA:   3'- -CGCACuGC---UGGU----GUAGCUu------GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 20840 0.66 0.799297
Target:  5'- aCG-GGCGGCCGCGcauccugcUCGAACGcCACa -3'
miRNA:   3'- cGCaCUGCUGGUGU--------AGCUUGCcGUGc -5'
26020 5' -53.3 NC_005342.2 + 30430 0.66 0.799297
Target:  5'- aUGUGcGCGAUCGCuUCGGACaGUGCGa -3'
miRNA:   3'- cGCAC-UGCUGGUGuAGCUUGcCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 10575 0.66 0.799297
Target:  5'- ---cGACGAgCGgGUCGGGCGcGCGCu -3'
miRNA:   3'- cgcaCUGCUgGUgUAGCUUGC-CGUGc -5'
26020 5' -53.3 NC_005342.2 + 27192 0.66 0.793434
Target:  5'- gGCGUGuCGacguucaggcgcgcaGCCGCGUCGGcgauguccggcaGCGcGCGCGc -3'
miRNA:   3'- -CGCACuGC---------------UGGUGUAGCU------------UGC-CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 27470 0.66 0.789491
Target:  5'- aGCGUGugcugaACGACCGCcgCGAuccauugcguGCGGUugauguaaGCGa -3'
miRNA:   3'- -CGCAC------UGCUGGUGuaGCU----------UGCCG--------UGC- -5'
26020 5' -53.3 NC_005342.2 + 41617 0.66 0.789491
Target:  5'- cGCGUGAUucugGGCCugAUgGAAcCGGacaGCGa -3'
miRNA:   3'- -CGCACUG----CUGGugUAgCUU-GCCg--UGC- -5'
26020 5' -53.3 NC_005342.2 + 18421 0.66 0.789491
Target:  5'- cGCGau-CGGCgGCGUCGAcaccGCGaGCGCGu -3'
miRNA:   3'- -CGCacuGCUGgUGUAGCU----UGC-CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 19450 0.66 0.786516
Target:  5'- aCGUGAUGggcagccgcGCCGCcgCGAcccgcgcggucgacGCGGCGCu -3'
miRNA:   3'- cGCACUGC---------UGGUGuaGCU--------------UGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 21810 0.66 0.786516
Target:  5'- aGCGUucgaggcauuccucGACGGCaauccCAUCGAauaccgcgacGCGGCGCGc -3'
miRNA:   3'- -CGCA--------------CUGCUGgu---GUAGCU----------UGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 17896 0.67 0.783526
Target:  5'- cGCGUGaagcuguccgccgguGCGGCCGCGcgccuggCGggUGGCGuCGc -3'
miRNA:   3'- -CGCAC---------------UGCUGGUGUa------GCuuGCCGU-GC- -5'
26020 5' -53.3 NC_005342.2 + 15451 0.67 0.779518
Target:  5'- gGCGUGcCGAgCGCAacagggcugcUCGcggcggucaccGGCGGCGCGu -3'
miRNA:   3'- -CGCACuGCUgGUGU----------AGC-----------UUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 13500 0.67 0.779518
Target:  5'- cGCG-GGCGGCguCACGUCaacuaaGGGCGGCAUc -3'
miRNA:   3'- -CGCaCUGCUG--GUGUAG------CUUGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 45236 0.67 0.779518
Target:  5'- ---nGGCGGCCGCAaucUCGGccgugACGGgCACGa -3'
miRNA:   3'- cgcaCUGCUGGUGU---AGCU-----UGCC-GUGC- -5'
26020 5' -53.3 NC_005342.2 + 25585 0.67 0.779518
Target:  5'- ---aGACGGCCAUccUCGGcgcguGCGGCGCa -3'
miRNA:   3'- cgcaCUGCUGGUGu-AGCU-----UGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 3202 0.67 0.776495
Target:  5'- aGCGUcuGCGcGCCGCcagcgccacgcgcgGUCGAGCGGC-CGg -3'
miRNA:   3'- -CGCAc-UGC-UGGUG--------------UAGCUUGCCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.