miRNA display CGI


Results 21 - 40 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 3' -53.6 NC_005342.2 + 21232 0.66 0.797954
Target:  5'- aCGCAAUGG--GUCAaguuccugGCCggCGCgGCGGg -3'
miRNA:   3'- -GCGUUGCCguUAGU--------UGGa-GCGgUGCC- -5'
26021 3' -53.6 NC_005342.2 + 39255 0.66 0.796974
Target:  5'- -cCAACGGCAAgaugaucgcggacUCGAgCggCGUCACGGu -3'
miRNA:   3'- gcGUUGCCGUU-------------AGUUgGa-GCGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 37035 0.66 0.795008
Target:  5'- uCGCGGCGGUgcucgacgcgcucgAAUCuGCgUCGCCcUGGc -3'
miRNA:   3'- -GCGUUGCCG--------------UUAGuUGgAGCGGuGCC- -5'
26021 3' -53.6 NC_005342.2 + 14326 0.66 0.795008
Target:  5'- gCGCGacacgGCGGCAugcuugcgcuucagGUCGGCgaUCGCCugcGCGGu -3'
miRNA:   3'- -GCGU-----UGCCGU--------------UAGUUGg-AGCGG---UGCC- -5'
26021 3' -53.6 NC_005342.2 + 1893 0.66 0.788074
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
26021 3' -53.6 NC_005342.2 + 38366 0.66 0.788074
Target:  5'- gGCAGcCGGUGcgCAACCggccgaUGCCGCGc -3'
miRNA:   3'- gCGUU-GCCGUuaGUUGGa-----GCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 14206 0.66 0.788074
Target:  5'- uGCGACGGCGugcgCGcgcGCCUCuuucgaGCCgaGCGGc -3'
miRNA:   3'- gCGUUGCCGUua--GU---UGGAG------CGG--UGCC- -5'
26021 3' -53.6 NC_005342.2 + 11801 0.66 0.788074
Target:  5'- gCGCGACGGCGcgcucCAGCUUgCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUua---GUUGGA-GCGGUgcc -5'
26021 3' -53.6 NC_005342.2 + 22791 0.66 0.785078
Target:  5'- aCGCGGCGGCAggagagcguAUCGAUCggugguaucgggcagGCCGCGa -3'
miRNA:   3'- -GCGUUGCCGU---------UAGUUGGag-------------CGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 17161 0.66 0.782066
Target:  5'- uCGCGccgauCGGCAAU-GACCcgacaaaucccuacaUCGUCGCGGg -3'
miRNA:   3'- -GCGUu----GCCGUUAgUUGG---------------AGCGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 23270 0.66 0.778028
Target:  5'- gCGCGgauCGGCAugCAGCUgaucggCGCCGCGu -3'
miRNA:   3'- -GCGUu--GCCGUuaGUUGGa-----GCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 30500 0.66 0.778028
Target:  5'- gCGCGGCGGCcuUCGcguugcGCCacauccggCGCC-CGGg -3'
miRNA:   3'- -GCGUUGCCGuuAGU------UGGa-------GCGGuGCC- -5'
26021 3' -53.6 NC_005342.2 + 19026 0.66 0.778028
Target:  5'- gGCAACGGCugg-AACgaCGCCaugcGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGgaGCGG----UGCC- -5'
26021 3' -53.6 NC_005342.2 + 801 0.66 0.778028
Target:  5'- aCGUAGCuGCGGUCGccugcGCgUCGCUcggcGCGGg -3'
miRNA:   3'- -GCGUUGcCGUUAGU-----UGgAGCGG----UGCC- -5'
26021 3' -53.6 NC_005342.2 + 29093 0.66 0.778028
Target:  5'- gCGCcccGGCGGCAAU--GCgUUGCgCACGGc -3'
miRNA:   3'- -GCG---UUGCCGUUAguUGgAGCG-GUGCC- -5'
26021 3' -53.6 NC_005342.2 + 3382 0.66 0.778028
Target:  5'- uCGCGcGCGGCGAUCuuCUUCaGCgucuCGCGGc -3'
miRNA:   3'- -GCGU-UGCCGUUAGuuGGAG-CG----GUGCC- -5'
26021 3' -53.6 NC_005342.2 + 15589 0.66 0.768854
Target:  5'- gGUuuCGGCGAacgucgugccguuggCGACCUCGaUCACGGc -3'
miRNA:   3'- gCGuuGCCGUUa--------------GUUGGAGC-GGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 18170 0.66 0.767827
Target:  5'- gCGCuACGGCAucgAUCcgcGCUUUGgCACGGu -3'
miRNA:   3'- -GCGuUGCCGU---UAGu--UGGAGCgGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 20216 0.66 0.767827
Target:  5'- gGCu-CGGCGGcCGACCagauucgCGCCGCGa -3'
miRNA:   3'- gCGuuGCCGUUaGUUGGa------GCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 28228 0.66 0.767827
Target:  5'- gGCAGCGGCGccGUCuuGCa-CGCCACc- -3'
miRNA:   3'- gCGUUGCCGU--UAGu-UGgaGCGGUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.