miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 5' -60.4 NC_005342.2 + 33572 0.66 0.409491
Target:  5'- uGGCGGCGcgagaaacucGCcuucaugGCGAcCGCGCaggcgaUCGCCGAc -3'
miRNA:   3'- -CCGCCGC----------CG-------UGCUaGCGCG------AGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 41636 0.66 0.407693
Target:  5'- cGGCGcaucguaaaaucgcGCGGUGCGGUCGUcCUCACgGc -3'
miRNA:   3'- -CCGC--------------CGCCGUGCUAGCGcGAGUGgCu -5'
26021 5' -60.4 NC_005342.2 + 3401 0.67 0.401438
Target:  5'- aGCuGCGGCGCGGUCGCcacCUgGuuGAc -3'
miRNA:   3'- cCGcCGCCGUGCUAGCGc--GAgUggCU- -5'
26021 5' -60.4 NC_005342.2 + 27727 0.67 0.401438
Target:  5'- cGCGaucGCGGCGCGAaucuggUCG-GC-CGCCGAg -3'
miRNA:   3'- cCGC---CGCCGUGCU------AGCgCGaGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 11688 0.67 0.399662
Target:  5'- gGGCGGCGuGCugGcGUCcuGCGCgauguccggcaGCCGAc -3'
miRNA:   3'- -CCGCCGC-CGugC-UAG--CGCGag---------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 20441 0.67 0.39261
Target:  5'- cGGCGGCGcgaagccuGCGcCGGUCGUGaCgcaGCCGGu -3'
miRNA:   3'- -CCGCCGC--------CGU-GCUAGCGC-Gag-UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 8935 0.67 0.39261
Target:  5'- cGCGuGCgcgGGCugGAUCGUGCg-GCCGu -3'
miRNA:   3'- cCGC-CG---CCGugCUAGCGCGagUGGCu -5'
26021 5' -60.4 NC_005342.2 + 12261 0.67 0.39261
Target:  5'- cGGCaccGGCGGCGCGcAUUGCgGCguccugcgCGCCa- -3'
miRNA:   3'- -CCG---CCGCCGUGC-UAGCG-CGa-------GUGGcu -5'
26021 5' -60.4 NC_005342.2 + 22792 0.67 0.39261
Target:  5'- cGCGGCGGCAgGAgaGCGU--AUCGAu -3'
miRNA:   3'- cCGCCGCCGUgCUagCGCGagUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 45522 0.67 0.391734
Target:  5'- cGCGGCuucguuuGGCGCGcaaGUGUUCGCCGc -3'
miRNA:   3'- cCGCCG-------CCGUGCuagCGCGAGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 11899 0.67 0.383909
Target:  5'- aGCGGCGcGCGCGccauuacgCGCGCUCcaGgCGGu -3'
miRNA:   3'- cCGCCGC-CGUGCua------GCGCGAG--UgGCU- -5'
26021 5' -60.4 NC_005342.2 + 14333 0.67 0.383046
Target:  5'- -aCGGCGGCAUGcUUGCGCuucaggucggcgaUCGCCu- -3'
miRNA:   3'- ccGCCGCCGUGCuAGCGCG-------------AGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 4644 0.67 0.375337
Target:  5'- cGGCGcGCGGgucuuucuuCAgGAUCGUGC-CAUCGGc -3'
miRNA:   3'- -CCGC-CGCC---------GUgCUAGCGCGaGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 23231 0.67 0.375337
Target:  5'- cGGCGGCGaacGCGcCGGUCGUGUUguUCGu -3'
miRNA:   3'- -CCGCCGC---CGU-GCUAGCGCGAguGGCu -5'
26021 5' -60.4 NC_005342.2 + 35605 0.67 0.375337
Target:  5'- gGGCGG-GGCGCGggCGgGCgcuacggCGCCc- -3'
miRNA:   3'- -CCGCCgCCGUGCuaGCgCGa------GUGGcu -5'
26021 5' -60.4 NC_005342.2 + 42692 0.67 0.375337
Target:  5'- cGcCGGCGGacgaGCGggCgGCGCUCucgACCGAu -3'
miRNA:   3'- cC-GCCGCCg---UGCuaG-CGCGAG---UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 6832 0.67 0.375337
Target:  5'- cGGCGGCuGCGCacugcAUUGCGCagcCAUCGAg -3'
miRNA:   3'- -CCGCCGcCGUGc----UAGCGCGa--GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 4788 0.67 0.374487
Target:  5'- uGCGGCGcgcaagcGCGCGAUgCGCGCguccgUCAgcCCGAc -3'
miRNA:   3'- cCGCCGC-------CGUGCUA-GCGCG-----AGU--GGCU- -5'
26021 5' -60.4 NC_005342.2 + 7821 0.67 0.366896
Target:  5'- cGCGGCcuGCGcCGGccauuuccagcUCGCGCUCGCCc- -3'
miRNA:   3'- cCGCCGc-CGU-GCU-----------AGCGCGAGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 20718 0.67 0.366896
Target:  5'- uGCGGUgaugacGGCGCGcgCGCuGCcggacaUCGCCGAc -3'
miRNA:   3'- cCGCCG------CCGUGCuaGCG-CG------AGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.