miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 5' -57.2 NC_005342.2 + 20723 0.66 0.542433
Target:  5'- cGGCGCaggcagACGCUGCGAucacgacGGcgauguaccGCGCGAagcacggucUGCCg -3'
miRNA:   3'- -CCGCG------UGCGAUGCU-------CC---------CGCGUU---------ACGG- -5'
26022 5' -57.2 NC_005342.2 + 30830 0.67 0.532875
Target:  5'- cGGCGCGagcUGCUGCucGcGCGCGA-GCCc -3'
miRNA:   3'- -CCGCGU---GCGAUGcuCcCGCGUUaCGG- -5'
26022 5' -57.2 NC_005342.2 + 16503 0.67 0.532875
Target:  5'- gGGC-CGCGa-GCGGuGGCGCAAcUGCCc -3'
miRNA:   3'- -CCGcGUGCgaUGCUcCCGCGUU-ACGG- -5'
26022 5' -57.2 NC_005342.2 + 14819 0.67 0.522327
Target:  5'- -uCGCG-GCUACGGuucGGcGCGCAGUcGCCg -3'
miRNA:   3'- ccGCGUgCGAUGCU---CC-CGCGUUA-CGG- -5'
26022 5' -57.2 NC_005342.2 + 12143 0.67 0.522327
Target:  5'- uGCGUACGUgGCu-GGcGCGCAGcGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCC-CGCGUUaCGG- -5'
26022 5' -57.2 NC_005342.2 + 41330 0.67 0.522327
Target:  5'- cGCGCuCGCUcgugcucugGCGGcagauugucGGGCGCGGgcugcgGCCg -3'
miRNA:   3'- cCGCGuGCGA---------UGCU---------CCCGCGUUa-----CGG- -5'
26022 5' -57.2 NC_005342.2 + 21139 0.67 0.522327
Target:  5'- aGCGCGCGCaacuugACGugauGGuGCGCuucgcgcUGCCg -3'
miRNA:   3'- cCGCGUGCGa-----UGCu---CC-CGCGuu-----ACGG- -5'
26022 5' -57.2 NC_005342.2 + 36917 0.67 0.516037
Target:  5'- gGGcCGCACGCcgGCGGucgagaauucgacccGGGCGCGcuugGCg -3'
miRNA:   3'- -CC-GCGUGCGa-UGCU---------------CCCGCGUua--CGg -5'
26022 5' -57.2 NC_005342.2 + 9598 0.67 0.511861
Target:  5'- uGCGCACcgGCUGCcGGcGGCGCGccugcGCCc -3'
miRNA:   3'- cCGCGUG--CGAUGcUC-CCGCGUua---CGG- -5'
26022 5' -57.2 NC_005342.2 + 47779 0.67 0.511861
Target:  5'- uGGCGCAaGCcaagcCGGcGGGCGCAcgGgCa -3'
miRNA:   3'- -CCGCGUgCGau---GCU-CCCGCGUuaCgG- -5'
26022 5' -57.2 NC_005342.2 + 38022 0.67 0.511861
Target:  5'- cGUGCACGCgGCGAccGGCGaAAUGCg -3'
miRNA:   3'- cCGCGUGCGaUGCUc-CCGCgUUACGg -5'
26022 5' -57.2 NC_005342.2 + 47844 0.67 0.511861
Target:  5'- aGGCGCAgGCgGCaaccGGGCGCGcgcaccgcGCCg -3'
miRNA:   3'- -CCGCGUgCGaUGcu--CCCGCGUua------CGG- -5'
26022 5' -57.2 NC_005342.2 + 38354 0.67 0.511861
Target:  5'- aGGCGCGcCGCcgGCagccGGuGCGCAAccgGCCg -3'
miRNA:   3'- -CCGCGU-GCGa-UGcu--CC-CGCGUUa--CGG- -5'
26022 5' -57.2 NC_005342.2 + 45618 0.67 0.501483
Target:  5'- aGGCGC-UGCU-CGA-GGUGCu-UGCCg -3'
miRNA:   3'- -CCGCGuGCGAuGCUcCCGCGuuACGG- -5'
26022 5' -57.2 NC_005342.2 + 17069 0.67 0.501483
Target:  5'- cGGCGCGcCGUUugGGcGGCGac--GCCa -3'
miRNA:   3'- -CCGCGU-GCGAugCUcCCGCguuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 27039 0.67 0.501483
Target:  5'- uGCGCACGgcCUuuaccuCGAcGGGCGU--UGCCg -3'
miRNA:   3'- cCGCGUGC--GAu-----GCU-CCCGCGuuACGG- -5'
26022 5' -57.2 NC_005342.2 + 28064 0.67 0.499418
Target:  5'- cGGCGCGgauggcccagagcUGCUgaGCGcGGGCGUAAUcggucgcacucgcGCCa -3'
miRNA:   3'- -CCGCGU-------------GCGA--UGCuCCCGCGUUA-------------CGG- -5'
26022 5' -57.2 NC_005342.2 + 37494 0.67 0.491198
Target:  5'- aGGCcaaGCAgGCcaaggaUGCGaAGcGGCGCGAUGCg -3'
miRNA:   3'- -CCG---CGUgCG------AUGC-UC-CCGCGUUACGg -5'
26022 5' -57.2 NC_005342.2 + 34218 0.67 0.491198
Target:  5'- -aCGC-CGC-GCGAGcGGCGCGcgGCg -3'
miRNA:   3'- ccGCGuGCGaUGCUC-CCGCGUuaCGg -5'
26022 5' -57.2 NC_005342.2 + 17116 0.67 0.488131
Target:  5'- aGCGCAUGC-GCGAGGaagucguGCGCGucgauauggcgGCCa -3'
miRNA:   3'- cCGCGUGCGaUGCUCC-------CGCGUua---------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.