miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26023 3' -51.5 NC_005342.2 + 7547 0.66 0.874762
Target:  5'- gCgGCGAUCGGGUugGUGUucuuugcggucgcgAGUGCGcCGa -3'
miRNA:   3'- -GgCGCUAGCCUA--UACG--------------UCACGUuGCa -5'
26023 3' -51.5 NC_005342.2 + 25399 0.66 0.869072
Target:  5'- uCCgGCGAUCGcgcuUGCAGUGUgccGGCGg -3'
miRNA:   3'- -GG-CGCUAGCcuauACGUCACG---UUGCa -5'
26023 3' -51.5 NC_005342.2 + 21311 0.66 0.852119
Target:  5'- gCGCGAUCacgcucacGAgcgGCGGUGCGACa- -3'
miRNA:   3'- gGCGCUAGc-------CUauaCGUCACGUUGca -5'
26023 3' -51.5 NC_005342.2 + 9355 0.67 0.834184
Target:  5'- gCGCGAagcggcgCGGGUGcGCGGacggGCGGCGUu -3'
miRNA:   3'- gGCGCUa------GCCUAUaCGUCa---CGUUGCA- -5'
26023 3' -51.5 NC_005342.2 + 27216 0.67 0.834184
Target:  5'- gCCGCG-UCGGcgAUGUccgGCAGCGc -3'
miRNA:   3'- -GGCGCuAGCCuaUACGucaCGUUGCa -5'
26023 3' -51.5 NC_005342.2 + 14870 0.67 0.824872
Target:  5'- aCGCGAUCGGGca-GCAG-GCGuuccACGa -3'
miRNA:   3'- gGCGCUAGCCUauaCGUCaCGU----UGCa -5'
26023 3' -51.5 NC_005342.2 + 5929 0.67 0.815344
Target:  5'- gCGCGA-CGGGUuuUGCAGUGgGGUGUa -3'
miRNA:   3'- gGCGCUaGCCUAu-ACGUCACgUUGCA- -5'
26023 3' -51.5 NC_005342.2 + 30434 0.68 0.764863
Target:  5'- gCGCGAUCGcuUcgGaCAGUGCGACc- -3'
miRNA:   3'- gGCGCUAGCcuAuaC-GUCACGUUGca -5'
26023 3' -51.5 NC_005342.2 + 19189 0.68 0.754281
Target:  5'- gCGCGAUCGuGGgcggcGCAGUGCucGCGc -3'
miRNA:   3'- gGCGCUAGC-CUaua--CGUCACGu-UGCa -5'
26023 3' -51.5 NC_005342.2 + 28714 0.7 0.688448
Target:  5'- gCCGCcgGAUCGGcGUGUGCGucgcGUGCGGCc- -3'
miRNA:   3'- -GGCG--CUAGCC-UAUACGU----CACGUUGca -5'
26023 3' -51.5 NC_005342.2 + 17920 0.7 0.665911
Target:  5'- gCCGCGcgccuggCGGGUGgcgucGCAgGUGCGACGg -3'
miRNA:   3'- -GGCGCua-----GCCUAUa----CGU-CACGUUGCa -5'
26023 3' -51.5 NC_005342.2 + 4360 0.71 0.620522
Target:  5'- gUGCGAcaaGGAUuUGCAGUGCcGCGa -3'
miRNA:   3'- gGCGCUag-CCUAuACGUCACGuUGCa -5'
26023 3' -51.5 NC_005342.2 + 23266 0.71 0.586554
Target:  5'- gCGCGcgCGGAUcgGCA-UGCAGCu- -3'
miRNA:   3'- gGCGCuaGCCUAuaCGUcACGUUGca -5'
26023 3' -51.5 NC_005342.2 + 46828 1.09 0.002141
Target:  5'- gCCGCGAUCGGAUAUGCAGUGCAACGUc -3'
miRNA:   3'- -GGCGCUAGCCUAUACGUCACGUUGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.