miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26023 5' -58.2 NC_005342.2 + 131 0.66 0.55269
Target:  5'- gGCGCGaGCACaCGAUcggCGCcugGCGCGAg- -3'
miRNA:   3'- -CGUGC-CGUG-GCUGaa-GCG---CGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 825 0.68 0.431661
Target:  5'- cGCuCGGCGCggguguuucgaCGACUggCGCGCugGCGGCa -3'
miRNA:   3'- -CGuGCCGUG-----------GCUGAa-GCGCG--CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 935 0.67 0.480381
Target:  5'- -uGCGGCGCa-GCaUUCGCGCGC-ACUu -3'
miRNA:   3'- cgUGCCGUGgcUG-AAGCGCGCGcUGA- -5'
26023 5' -58.2 NC_005342.2 + 1097 0.7 0.319778
Target:  5'- cGCGaaguCGGUGCCGuGCU--GCGCGCGACg -3'
miRNA:   3'- -CGU----GCCGUGGC-UGAagCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 1293 0.72 0.231093
Target:  5'- gGCGC-GCGCCGcCUUggcUGCGCGCGAUg -3'
miRNA:   3'- -CGUGcCGUGGCuGAA---GCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 2369 0.68 0.403853
Target:  5'- -gACGGCGCCGGCggucgccuggUCGCcGUacaGCGGCa -3'
miRNA:   3'- cgUGCCGUGGCUGa---------AGCG-CG---CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 2609 0.68 0.431661
Target:  5'- cGCGCGGUucaucgcgcucGCCGGCguaUCgGCG-GCGACa -3'
miRNA:   3'- -CGUGCCG-----------UGGCUGa--AG-CGCgCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 2836 0.66 0.55269
Target:  5'- uCGCGGCGuuugcgaaCGACgUCGCG-GCGGCg -3'
miRNA:   3'- cGUGCCGUg-------GCUGaAGCGCgCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 2982 0.66 0.510866
Target:  5'- gGCGCGucCGCCgGACguaGCGCGCGAa- -3'
miRNA:   3'- -CGUGCc-GUGG-CUGaagCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 3013 0.68 0.441177
Target:  5'- aGguCGGCACCGACaa-GCaCGUGGCc -3'
miRNA:   3'- -CguGCCGUGGCUGaagCGcGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 3079 0.83 0.038021
Target:  5'- aGCGCGGCcaguaucggGCCGACUUCGgGCGaCGACa -3'
miRNA:   3'- -CGUGCCG---------UGGCUGAAGCgCGC-GCUGa -5'
26023 5' -58.2 NC_005342.2 + 3283 0.66 0.528495
Target:  5'- cGCGCGGCGgCGcgcgguugaauuaaACUaUCGCuucGCGCGAUUc -3'
miRNA:   3'- -CGUGCCGUgGC--------------UGA-AGCG---CGCGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 3292 0.78 0.097353
Target:  5'- uGCGCGcGCaggauagcuGCCGACUUcuucggCGCGCGCGACg -3'
miRNA:   3'- -CGUGC-CG---------UGGCUGAA------GCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 3355 0.72 0.231093
Target:  5'- aGCugGcGCAgCGAgUcgggcagguugUCGCGCGCGGCg -3'
miRNA:   3'- -CGugC-CGUgGCUgA-----------AGCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 3525 0.67 0.470416
Target:  5'- aCGCGGUGCCG-CgcaGCGCGuCGGCc -3'
miRNA:   3'- cGUGCCGUGGCuGaagCGCGC-GCUGa -5'
26023 5' -58.2 NC_005342.2 + 5043 0.72 0.249529
Target:  5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3'
miRNA:   3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 5365 0.66 0.531629
Target:  5'- aGC-CGGCGuuGACcugUUCGCGUucuucugccaucGCGGCa -3'
miRNA:   3'- -CGuGCCGUggCUG---AAGCGCG------------CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 6183 0.68 0.412997
Target:  5'- --uUGGCAUCGGCUUguucuucgCGUGCGCGAa- -3'
miRNA:   3'- cguGCCGUGGCUGAA--------GCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 6726 0.69 0.377203
Target:  5'- cCACGGCGCCccggUCGCGCGCc--- -3'
miRNA:   3'- cGUGCCGUGGcugaAGCGCGCGcuga -5'
26023 5' -58.2 NC_005342.2 + 7192 0.66 0.542126
Target:  5'- -gGCGGCGCgaaacguguCGACgaUCGUGCGCGcCg -3'
miRNA:   3'- cgUGCCGUG---------GCUGa-AGCGCGCGCuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.