miRNA display CGI


Results 21 - 40 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26023 5' -58.2 NC_005342.2 + 3283 0.66 0.528495
Target:  5'- cGCGCGGCGgCGcgcgguugaauuaaACUaUCGCuucGCGCGAUUc -3'
miRNA:   3'- -CGUGCCGUgGC--------------UGA-AGCG---CGCGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 36686 0.66 0.522246
Target:  5'- gGCgACGGCGCaguucaacaGCGCGCGGCa -3'
miRNA:   3'- -CG-UGCCGUGgcugaag--CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 9974 0.66 0.521208
Target:  5'- uGCGCGGUugUcGGCcgUC-UGCGCGACg -3'
miRNA:   3'- -CGUGCCGugG-CUGa-AGcGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 20601 0.66 0.521208
Target:  5'- gGCGCGGC-UCGGCcUCGCGCaGUcgGGCc -3'
miRNA:   3'- -CGUGCCGuGGCUGaAGCGCG-CG--CUGa -5'
26023 5' -58.2 NC_005342.2 + 9310 0.66 0.52017
Target:  5'- --uCGGCGCuuuCGugUUCgucgucgGCGCGCGGCg -3'
miRNA:   3'- cguGCCGUG---GCugAAG-------CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 35096 0.66 0.510866
Target:  5'- -gACGGCACCGAgaUUG-GUGuCGACa -3'
miRNA:   3'- cgUGCCGUGGCUgaAGCgCGC-GCUGa -5'
26023 5' -58.2 NC_005342.2 + 2982 0.66 0.510866
Target:  5'- gGCGCGucCGCCgGACguaGCGCGCGAa- -3'
miRNA:   3'- -CGUGCc-GUGG-CUGaagCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 39365 0.66 0.510866
Target:  5'- uCGC-GCAUCGGCUUCGUGCaucGCGAa- -3'
miRNA:   3'- cGUGcCGUGGCUGAAGCGCG---CGCUga -5'
26023 5' -58.2 NC_005342.2 + 39070 0.66 0.510866
Target:  5'- cGCGuCGcGCAUCGACgccaaccUCGCcaagaucaagguGCGCGGCUa -3'
miRNA:   3'- -CGU-GC-CGUGGCUGa------AGCG------------CGCGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 44373 0.66 0.510866
Target:  5'- cGCA-GGCGcCCGACUgggcgaauacgaUCGC-CGCGAUg -3'
miRNA:   3'- -CGUgCCGU-GGCUGA------------AGCGcGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 41571 0.66 0.510866
Target:  5'- cGUACGGCA-CGACcgcaugCGCGUGgGAUUc -3'
miRNA:   3'- -CGUGCCGUgGCUGaa----GCGCGCgCUGA- -5'
26023 5' -58.2 NC_005342.2 + 17146 0.66 0.510866
Target:  5'- aUAUGGCgGCCaACUUCGCGC-CGAUc -3'
miRNA:   3'- cGUGCCG-UGGcUGAAGCGCGcGCUGa -5'
26023 5' -58.2 NC_005342.2 + 28521 0.66 0.510866
Target:  5'- ---aGGCGCUGGCa-CGCGCGUGAa- -3'
miRNA:   3'- cgugCCGUGGCUGaaGCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 17845 0.66 0.510866
Target:  5'- gGUcCGGCGCCGgucGCUUCGaCGUuCGGCa -3'
miRNA:   3'- -CGuGCCGUGGC---UGAAGC-GCGcGCUGa -5'
26023 5' -58.2 NC_005342.2 + 21438 0.66 0.509836
Target:  5'- cGCACcugucggcGCGCCgGACUUCaucgacggaaaugGCGUGCGGCa -3'
miRNA:   3'- -CGUGc-------CGUGG-CUGAAG-------------CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 18172 0.66 0.506753
Target:  5'- uGC-CGGCguGCCGGgUgaugcgcucgucgUGCGCGCGGCa -3'
miRNA:   3'- -CGuGCCG--UGGCUgAa------------GCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 38973 0.67 0.500611
Target:  5'- -aGCGGCcgGCaGGCgcacgCGCGCGCGAUc -3'
miRNA:   3'- cgUGCCG--UGgCUGaa---GCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 16087 0.67 0.500611
Target:  5'- gGC-CGGCcuGCCGACagUCGCcGCGUucGACg -3'
miRNA:   3'- -CGuGCCG--UGGCUGa-AGCG-CGCG--CUGa -5'
26023 5' -58.2 NC_005342.2 + 36874 0.67 0.500611
Target:  5'- cGUGCGGCAuCCcGCagCGCG-GCGACa -3'
miRNA:   3'- -CGUGCCGU-GGcUGaaGCGCgCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 28765 0.67 0.500611
Target:  5'- aGCACuGCGCCGcccACgaUCGCGC-CGACc -3'
miRNA:   3'- -CGUGcCGUGGC---UGa-AGCGCGcGCUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.