miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 5' -60.5 NC_005342.2 + 28062 0.67 0.351107
Target:  5'- gACgGCGCggauggcccagagCUGCUgaGCGCGGGCGUa- -3'
miRNA:   3'- aUGgCGUGa------------GAUGG--CGCGCCCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 3175 0.67 0.346214
Target:  5'- uUGCCcggGCGCg--GCCGCGCGGuguucaGCGUCu -3'
miRNA:   3'- -AUGG---CGUGagaUGGCGCGCC------CGCAGc -5'
26024 5' -60.5 NC_005342.2 + 22034 0.67 0.346214
Target:  5'- cGCCGCGCgcaauagCUACgugcaaGCGCaGGGCGgCGa -3'
miRNA:   3'- aUGGCGUGa------GAUGg-----CGCG-CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 16988 0.67 0.338967
Target:  5'- cGCCGCGCUCgACuCGUGCacgcugcaggccaauGGCGUCa -3'
miRNA:   3'- aUGGCGUGAGaUG-GCGCGc--------------CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 13737 0.67 0.338169
Target:  5'- cGCCGCGCgCcGCuCGCGCGGcGUGUa- -3'
miRNA:   3'- aUGGCGUGaGaUG-GCGCGCC-CGCAgc -5'
26024 5' -60.5 NC_005342.2 + 37110 0.67 0.330261
Target:  5'- cGCCgGCGUUCUucCCGCGCGG-CGUCa -3'
miRNA:   3'- aUGG-CGUGAGAu-GGCGCGCCcGCAGc -5'
26024 5' -60.5 NC_005342.2 + 47164 0.67 0.330261
Target:  5'- gACCGCAgCUaCgucGCCGCucGCGGGCGcCa -3'
miRNA:   3'- aUGGCGU-GA-Ga--UGGCG--CGCCCGCaGc -5'
26024 5' -60.5 NC_005342.2 + 10835 0.68 0.32249
Target:  5'- --aCGCGCUUgacGCCGCGCGGGaagaaCGcCGg -3'
miRNA:   3'- augGCGUGAGa--UGGCGCGCCC-----GCaGC- -5'
26024 5' -60.5 NC_005342.2 + 15407 0.68 0.307359
Target:  5'- gGCCGCGCUCaUGuuGCaCGuGGCGUUc -3'
miRNA:   3'- aUGGCGUGAG-AUggCGcGC-CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 45240 0.68 0.3
Target:  5'- gGCCGCAauCUCgGCCGUGaCGGGCa--- -3'
miRNA:   3'- aUGGCGU--GAGaUGGCGC-GCCCGcagc -5'
26024 5' -60.5 NC_005342.2 + 26998 0.68 0.293494
Target:  5'- cGCCGCGCgcguuugcgUCcggccccguggcguaGCCGC-CGGGCGUCGg -3'
miRNA:   3'- aUGGCGUG---------AGa--------------UGGCGcGCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 4066 0.68 0.285691
Target:  5'- cGCCGC-CcUUGCCGaGCGGGCG-CGa -3'
miRNA:   3'- aUGGCGuGaGAUGGCgCGCCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 44736 0.68 0.285691
Target:  5'- gGCCGCuCg--ACCGCGCGuGGCGcuggCGg -3'
miRNA:   3'- aUGGCGuGagaUGGCGCGC-CCGCa---GC- -5'
26024 5' -60.5 NC_005342.2 + 18790 0.68 0.28499
Target:  5'- aACCGCGCUU-AUCGCGCggccgcaGGGCG-CGu -3'
miRNA:   3'- aUGGCGUGAGaUGGCGCG-------CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 16758 0.68 0.283592
Target:  5'- gUACCGCgacuucaucauuucACUCaucCCGC-CGGGUGUCGa -3'
miRNA:   3'- -AUGGCG--------------UGAGau-GGCGcGCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 28169 0.69 0.278742
Target:  5'- cAUCGCACUCaa-CGCGCGGcacgaucccguGCGUUGg -3'
miRNA:   3'- aUGGCGUGAGaugGCGCGCC-----------CGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 18004 0.69 0.278742
Target:  5'- --aCGCGCUgauCgCGCGCGGcGCGUCGa -3'
miRNA:   3'- augGCGUGAgauG-GCGCGCC-CGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 45968 0.69 0.265247
Target:  5'- gGCCGUgACgUCgggcaucauCCGCGCGGGCGUg- -3'
miRNA:   3'- aUGGCG-UG-AGau-------GGCGCGCCCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 44780 0.69 0.265247
Target:  5'- cACCGCGCg--GCCGCGCccGGGCa--- -3'
miRNA:   3'- aUGGCGUGagaUGGCGCG--CCCGcagc -5'
26024 5' -60.5 NC_005342.2 + 28339 0.69 0.263269
Target:  5'- gGCCGCGCUC-GCCGCGCucGccgugaccuuguucGCGUCGu -3'
miRNA:   3'- aUGGCGUGAGaUGGCGCGc-C--------------CGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.