miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 3' -52.6 NC_005342.2 + 22063 0.67 0.776678
Target:  5'- aGGGCGgcgaaGCGCGGCgc---UUGGCGCu -3'
miRNA:   3'- gCUUGU-----UGCGCCGaagcaAACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 47049 0.67 0.776678
Target:  5'- aCGcAUAGCGCGGCgcaCGcuacgagGGCGCa -3'
miRNA:   3'- -GCuUGUUGCGCCGaa-GCaaa----CCGCGc -5'
26025 3' -52.6 NC_005342.2 + 10322 0.67 0.776678
Target:  5'- --cACGACGCaGGCa--GUUUGGCGUc -3'
miRNA:   3'- gcuUGUUGCG-CCGaagCAAACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 20958 0.67 0.775652
Target:  5'- gCGGACGcaaacgcGCGCGGCgcgggCGagugGGUGCGu -3'
miRNA:   3'- -GCUUGU-------UGCGCCGaa---GCaaa-CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 18596 0.67 0.76636
Target:  5'- aCGAcCGGCGCGGCa------GGCGCGg -3'
miRNA:   3'- -GCUuGUUGCGCCGaagcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 5758 0.67 0.76636
Target:  5'- gCGcauCAGCGCGGCUauuuUCGguggucaUGGUGUGg -3'
miRNA:   3'- -GCuu-GUUGCGCCGA----AGCaa-----ACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 11783 0.67 0.755898
Target:  5'- aGuACGACGCGGCcaucagCGcgacGGCGCGc -3'
miRNA:   3'- gCuUGUUGCGCCGaa----GCaaa-CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 28477 0.68 0.745305
Target:  5'- cCGAGCGccgcgucgaccGCGCGGgUcgCGgc-GGCGCGg -3'
miRNA:   3'- -GCUUGU-----------UGCGCCgAa-GCaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 16874 0.68 0.745305
Target:  5'- aCGAAacGCGCGGCUgCGUcgcucGGCaGCGg -3'
miRNA:   3'- -GCUUguUGCGCCGAaGCAaa---CCG-CGC- -5'
26025 3' -52.6 NC_005342.2 + 30347 0.68 0.734591
Target:  5'- -cAGCAGCGCGGCaa-----GGCGCGg -3'
miRNA:   3'- gcUUGUUGCGCCGaagcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 13501 0.68 0.711757
Target:  5'- gCGGGCGGCGUcacgucaacuaagGGCggcaUCGUcgagaUUGGCGCa -3'
miRNA:   3'- -GCUUGUUGCG-------------CCGa---AGCA-----AACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 15861 0.68 0.701853
Target:  5'- aGAACcccGACGCGGCgcugaacgUCGUgcuGCGCa -3'
miRNA:   3'- gCUUG---UUGCGCCGa-------AGCAaacCGCGc -5'
26025 3' -52.6 NC_005342.2 + 20893 0.68 0.701853
Target:  5'- cCGGcGCAGCGCGuGCUaC--UUGGCGCGc -3'
miRNA:   3'- -GCU-UGUUGCGC-CGAaGcaAACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 3241 0.69 0.690783
Target:  5'- cCGGACAGCGCgccguGGUagaUCGUaUGGUGCu -3'
miRNA:   3'- -GCUUGUUGCG-----CCGa--AGCAaACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 13206 0.69 0.679653
Target:  5'- aGGACAGCGCGucacGCcgauggUGUUcGGCGCGa -3'
miRNA:   3'- gCUUGUUGCGC----CGaa----GCAAaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 39737 0.69 0.668477
Target:  5'- gGAACucGCGCGGCgccac--GGCGCGg -3'
miRNA:   3'- gCUUGu-UGCGCCGaagcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 43118 0.69 0.668477
Target:  5'- -cGGCGGCaGCGGCaUCGgcacGGCGCGc -3'
miRNA:   3'- gcUUGUUG-CGCCGaAGCaaa-CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 19294 0.69 0.668477
Target:  5'- uGAACAACGCGuGCcUC----GGCGCGc -3'
miRNA:   3'- gCUUGUUGCGC-CGaAGcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 1471 0.69 0.668477
Target:  5'- cCGAGCAGCGCGGCggacacUUCGacgccGaGUGCGu -3'
miRNA:   3'- -GCUUGUUGCGCCG------AAGCaaa--C-CGCGC- -5'
26025 3' -52.6 NC_005342.2 + 46056 0.69 0.646027
Target:  5'- aCGAGCGggcgccguuauGCGCcGCUgCGgauUUGGCGCGg -3'
miRNA:   3'- -GCUUGU-----------UGCGcCGAaGCa--AACCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.