miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 5' -56.9 NC_005342.2 + 15785 0.66 0.579587
Target:  5'- aUCGCGCCGacGCCugcGCACGUU-CCg -3'
miRNA:   3'- cGGCGCGGCa-UGGuucCGUGCAAcGG- -5'
26025 5' -56.9 NC_005342.2 + 14844 0.66 0.568778
Target:  5'- cGCCGCGCCGc----AGGCAUc--GCCg -3'
miRNA:   3'- -CGGCGCGGCaugguUCCGUGcaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 17478 0.67 0.562317
Target:  5'- cGCCGCGCCGUAUguacagCGAuucggugaguaccucGGCgACGccacgGCCg -3'
miRNA:   3'- -CGGCGCGGCAUG------GUU---------------CCG-UGCaa---CGG- -5'
26025 5' -56.9 NC_005342.2 + 44147 0.67 0.55802
Target:  5'- uGCCG-GCgCGUG-CGAGGCGCuugGCCu -3'
miRNA:   3'- -CGGCgCG-GCAUgGUUCCGUGcaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 16653 0.67 0.55802
Target:  5'- aCCGCGCgGUGCgGAaGCACc--GCCg -3'
miRNA:   3'- cGGCGCGgCAUGgUUcCGUGcaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 26998 0.67 0.55802
Target:  5'- cGCCGCGCgCGuUugCGuccGGCcccgugGCGUaGCCg -3'
miRNA:   3'- -CGGCGCG-GC-AugGUu--CCG------UGCAaCGG- -5'
26025 5' -56.9 NC_005342.2 + 12110 0.67 0.55802
Target:  5'- gGuuGCGCCGgucGCgcAGGC-CGUcGCCa -3'
miRNA:   3'- -CggCGCGGCa--UGguUCCGuGCAaCGG- -5'
26025 5' -56.9 NC_005342.2 + 14060 0.67 0.55802
Target:  5'- aGUCGCaUCGUACCAGGGCAU----CCg -3'
miRNA:   3'- -CGGCGcGGCAUGGUUCCGUGcaacGG- -5'
26025 5' -56.9 NC_005342.2 + 37644 0.67 0.547321
Target:  5'- uGCCuGCGUCGUGggAAGuGCACGUgaaagacaucgGCCg -3'
miRNA:   3'- -CGG-CGCGGCAUggUUC-CGUGCAa----------CGG- -5'
26025 5' -56.9 NC_005342.2 + 13489 0.67 0.547321
Target:  5'- aGCUGguCGCCGU-CCGAcGuGCucgcgGCGUUGCCg -3'
miRNA:   3'- -CGGC--GCGGCAuGGUU-C-CG-----UGCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 8215 0.67 0.547321
Target:  5'- uCCGCGCCGUGgCGccGCGCGaguuCCg -3'
miRNA:   3'- cGGCGCGGCAUgGUucCGUGCaac-GG- -5'
26025 5' -56.9 NC_005342.2 + 19461 0.67 0.547321
Target:  5'- aGCCGCGCCGccgcgACCcgcgcggucgacgcGGCGCucgggcaGUUGCUg -3'
miRNA:   3'- -CGGCGCGGCa----UGGuu------------CCGUG-------CAACGG- -5'
26025 5' -56.9 NC_005342.2 + 29465 0.67 0.547321
Target:  5'- uCCGuCGgCGUGCCGgcagcggcGGGUACGccuccggUGCCg -3'
miRNA:   3'- cGGC-GCgGCAUGGU--------UCCGUGCa------ACGG- -5'
26025 5' -56.9 NC_005342.2 + 41810 0.67 0.546254
Target:  5'- uGCUGCGCgacgaggCGUGuCgCGAGGUGCGccagUUGCCg -3'
miRNA:   3'- -CGGCGCG-------GCAU-G-GUUCCGUGC----AACGG- -5'
26025 5' -56.9 NC_005342.2 + 25047 0.67 0.536687
Target:  5'- cGUCGCGCCGUAgUugaucGCACuGUcacUGCCg -3'
miRNA:   3'- -CGGCGCGGCAUgGuuc--CGUG-CA---ACGG- -5'
26025 5' -56.9 NC_005342.2 + 44325 0.67 0.536687
Target:  5'- aCCGUGCCGcUGCCGccGCGCGagcagGCg -3'
miRNA:   3'- cGGCGCGGC-AUGGUucCGUGCaa---CGg -5'
26025 5' -56.9 NC_005342.2 + 17829 0.67 0.536687
Target:  5'- cGUCGCGCC--AUC--GGCGCGU-GCCa -3'
miRNA:   3'- -CGGCGCGGcaUGGuuCCGUGCAaCGG- -5'
26025 5' -56.9 NC_005342.2 + 3161 0.67 0.536687
Target:  5'- aGUC-CGCCGUuuucuuGCCcGGGCGCG--GCCg -3'
miRNA:   3'- -CGGcGCGGCA------UGGuUCCGUGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 19346 0.67 0.536687
Target:  5'- gGCCuGCGCCGagcgcgACCGugcGGCACGagcGCUc -3'
miRNA:   3'- -CGG-CGCGGCa-----UGGUu--CCGUGCaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 19741 0.67 0.533511
Target:  5'- cGCCGCuGCCGUcaacgacgcgaucgGCCGcuccaacGCACGggaucgUGCCg -3'
miRNA:   3'- -CGGCG-CGGCA--------------UGGUuc-----CGUGCa-----ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.