miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26026 5' -57.6 NC_005342.2 + 30326 0.66 0.585977
Target:  5'- uCGCGaacGUgUCGGCCacGGCaccGGGCGCGGc -3'
miRNA:   3'- -GCGU---UAgAGCCGGcaCUG---CCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 23983 0.69 0.368933
Target:  5'- aGCGAUCaucgagUCgGGCCuGUucccgcagccGGCGGGCACGAa -3'
miRNA:   3'- gCGUUAG------AG-CCGG-CA----------CUGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 36109 0.7 0.327747
Target:  5'- uCGCGcccGUCUCGGCCGaccggcaGACGGaaGCGAu -3'
miRNA:   3'- -GCGU---UAGAGCCGGCa------CUGCCcgUGCU- -5'
26026 5' -57.6 NC_005342.2 + 9026 0.71 0.319929
Target:  5'- aCGCAG-CUCGGCC--GACGGgauGCGCGGg -3'
miRNA:   3'- -GCGUUaGAGCCGGcaCUGCC---CGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 24532 0.71 0.282947
Target:  5'- -cCGAUC-CGGCCGgcGGCGGGUACGu -3'
miRNA:   3'- gcGUUAGaGCCGGCa-CUGCCCGUGCu -5'
26026 5' -57.6 NC_005342.2 + 17135 0.72 0.249433
Target:  5'- aGCAG-CUCGcGCCGcUGACGGGCcagGCGc -3'
miRNA:   3'- gCGUUaGAGC-CGGC-ACUGCCCG---UGCu -5'
26026 5' -57.6 NC_005342.2 + 45956 0.74 0.197424
Target:  5'- uGUGAUCgacgCGGCCGUGAcguCGGGCAUc- -3'
miRNA:   3'- gCGUUAGa---GCCGGCACU---GCCCGUGcu -5'
26026 5' -57.6 NC_005342.2 + 45198 0.76 0.14692
Target:  5'- gCGCAAUCgcuucaCGGUCGUGACGaacgcgaccGGCACGGc -3'
miRNA:   3'- -GCGUUAGa-----GCCGGCACUGC---------CCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 45242 1.09 0.000546
Target:  5'- cCGCAAUCUCGGCCGUGACGGGCACGAa -3'
miRNA:   3'- -GCGUUAGAGCCGGCACUGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 14478 0.69 0.377585
Target:  5'- -cCAAUCgugaaCGUGACGGGCACGAc -3'
miRNA:   3'- gcGUUAGagccgGCACUGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 42847 0.69 0.385488
Target:  5'- gGCGG-CUCGcCCGUGACGGacgacaaugugcuGCGCGAg -3'
miRNA:   3'- gCGUUaGAGCcGGCACUGCC-------------CGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 47709 0.66 0.57521
Target:  5'- cCGUGAccgugCUCGGCggCGUGACGaccacaucgaacGGCACGGc -3'
miRNA:   3'- -GCGUUa----GAGCCG--GCACUGC------------CCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 8206 0.66 0.564488
Target:  5'- uGCGaggcGUC-CGcGCCGUGGCGccGCGCGAg -3'
miRNA:   3'- gCGU----UAGaGC-CGGCACUGCc-CGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 30812 0.67 0.511821
Target:  5'- gCGCGAagUUGGCCGccauaucGACGcGCACGAc -3'
miRNA:   3'- -GCGUUagAGCCGGCa------CUGCcCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 3227 0.67 0.491315
Target:  5'- gCGCGGUCgagCGGCCG-GACa-GCGCGc -3'
miRNA:   3'- -GCGUUAGa--GCCGGCaCUGccCGUGCu -5'
26026 5' -57.6 NC_005342.2 + 43230 0.68 0.451507
Target:  5'- aGuCAAUgUCGGUgaaggccggCGUGcucGCGGGCGCGAc -3'
miRNA:   3'- gC-GUUAgAGCCG---------GCAC---UGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 16901 0.68 0.451507
Target:  5'- aGCGGUCUgaugaagcUGGCCGgcauuGCGGGCGCc- -3'
miRNA:   3'- gCGUUAGA--------GCCGGCac---UGCCCGUGcu -5'
26026 5' -57.6 NC_005342.2 + 24732 0.68 0.432275
Target:  5'- gGCGcgUUCGccGCCGUGaucaagacggcgGCGGGUACGGg -3'
miRNA:   3'- gCGUuaGAGC--CGGCAC------------UGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 21232 0.69 0.386373
Target:  5'- aCGCAAugggucaaguUCcUGGCCGgcgcGGCGGGCAuCGAc -3'
miRNA:   3'- -GCGUU----------AGaGCCGGCa---CUGCCCGU-GCU- -5'
26026 5' -57.6 NC_005342.2 + 44484 0.66 0.585977
Target:  5'- gGCGgcAUCUUGGCCGUuacCGaGGuCGCGAa -3'
miRNA:   3'- gCGU--UAGAGCCGGCAcu-GC-CC-GUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.