Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26026 | 5' | -57.6 | NC_005342.2 | + | 45817 | 0.69 | 0.368933 |
Target: 5'- cCGCAAcCUUGGCCGagcGCGGuGCGCGc -3' miRNA: 3'- -GCGUUaGAGCCGGCac-UGCC-CGUGCu -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 23983 | 0.69 | 0.368933 |
Target: 5'- aGCGAUCaucgagUCgGGCCuGUucccgcagccGGCGGGCACGAa -3' miRNA: 3'- gCGUUAG------AG-CCGG-CA----------CUGCCCGUGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 36109 | 0.7 | 0.327747 |
Target: 5'- uCGCGcccGUCUCGGCCGaccggcaGACGGaaGCGAu -3' miRNA: 3'- -GCGU---UAGAGCCGGCa------CUGCCcgUGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 9026 | 0.71 | 0.319929 |
Target: 5'- aCGCAG-CUCGGCC--GACGGgauGCGCGGg -3' miRNA: 3'- -GCGUUaGAGCCGGcaCUGCC---CGUGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 31326 | 0.71 | 0.304716 |
Target: 5'- gCGCcGUCUCGGCCGcUGugGccGCGCGc -3' miRNA: 3'- -GCGuUAGAGCCGGC-ACugCc-CGUGCu -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 24532 | 0.71 | 0.282947 |
Target: 5'- -cCGAUC-CGGCCGgcGGCGGGUACGu -3' miRNA: 3'- gcGUUAGaGCCGGCa-CUGCCCGUGCu -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 13302 | 0.72 | 0.265093 |
Target: 5'- aCGCAGaccuuggaacgacccUUUCGGCacgGUGuACGGGCGCGGc -3' miRNA: 3'- -GCGUU---------------AGAGCCGg--CAC-UGCCCGUGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 13859 | 0.72 | 0.255863 |
Target: 5'- gCGCGAagUCGGCCG-GcACGGGCugcGCGGc -3' miRNA: 3'- -GCGUUagAGCCGGCaC-UGCCCG---UGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 17135 | 0.72 | 0.249433 |
Target: 5'- aGCAG-CUCGcGCCGcUGACGGGCcagGCGc -3' miRNA: 3'- gCGUUaGAGC-CGGC-ACUGCCCG---UGCu -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 45956 | 0.74 | 0.197424 |
Target: 5'- uGUGAUCgacgCGGCCGUGAcguCGGGCAUc- -3' miRNA: 3'- gCGUUAGa---GCCGGCACU---GCCCGUGcu -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 30440 | 0.74 | 0.187231 |
Target: 5'- gGCGAgCUCGGCCGUGGCGucGC-CGAg -3' miRNA: 3'- gCGUUaGAGCCGGCACUGCc-CGuGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 45198 | 0.76 | 0.14692 |
Target: 5'- gCGCAAUCgcuucaCGGUCGUGACGaacgcgaccGGCACGGc -3' miRNA: 3'- -GCGUUAGa-----GCCGGCACUGC---------CCGUGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 11834 | 0.78 | 0.094295 |
Target: 5'- uCGCuuccGUCugccggUCGGCCGaGACGGGCGCGAg -3' miRNA: 3'- -GCGu---UAG------AGCCGGCaCUGCCCGUGCU- -5' |
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26026 | 5' | -57.6 | NC_005342.2 | + | 45242 | 1.09 | 0.000546 |
Target: 5'- cCGCAAUCUCGGCCGUGACGGGCACGAa -3' miRNA: 3'- -GCGUUAGAGCCGGCACUGCCCGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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