miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26027 5' -55 NC_005342.2 + 30679 0.66 0.704853
Target:  5'- cGGccGUCAGGcgCGacuccauaaagcccuGCUGCUGCGGgCUg -3'
miRNA:   3'- aCCa-UAGUCCa-GC---------------UGACGAUGCCgGG- -5'
26027 5' -55 NC_005342.2 + 39283 0.66 0.700494
Target:  5'- cGGcGUCAcGGUCGGCacguucgccgUGCUgaacgccgACGGCaCCg -3'
miRNA:   3'- aCCaUAGU-CCAGCUG----------ACGA--------UGCCG-GG- -5'
26027 5' -55 NC_005342.2 + 29060 0.66 0.682955
Target:  5'- gGGUGUacCAGccgcgCGGCUGCUuaacacgcaccucgaGCGGCUCg -3'
miRNA:   3'- aCCAUA--GUCca---GCUGACGA---------------UGCCGGG- -5'
26027 5' -55 NC_005342.2 + 17934 0.66 0.678549
Target:  5'- gGGUGgcgucgCAGGUgCGACg---GCGGCCa -3'
miRNA:   3'- aCCAUa-----GUCCA-GCUGacgaUGCCGGg -5'
26027 5' -55 NC_005342.2 + 41350 0.67 0.623092
Target:  5'- cGGcagauUGUCGGG-CG-CggGCUGCGGCCg -3'
miRNA:   3'- aCC-----AUAGUCCaGCuGa-CGAUGCCGGg -5'
26027 5' -55 NC_005342.2 + 13412 0.67 0.623092
Target:  5'- ---cGUCAGGgauUCGACUGCUgGCgGGCaCCu -3'
miRNA:   3'- accaUAGUCC---AGCUGACGA-UG-CCG-GG- -5'
26027 5' -55 NC_005342.2 + 33772 0.68 0.603109
Target:  5'- aUGG-GUCuGGUCGAacaauugcgucaUGCUgccgcacccggacgaGCGGCCCg -3'
miRNA:   3'- -ACCaUAGuCCAGCUg-----------ACGA---------------UGCCGGG- -5'
26027 5' -55 NC_005342.2 + 36556 0.68 0.600893
Target:  5'- cGGUcgaAGG-CGACgUGCUGCGGCa- -3'
miRNA:   3'- aCCAuagUCCaGCUG-ACGAUGCCGgg -5'
26027 5' -55 NC_005342.2 + 31958 0.68 0.556893
Target:  5'- cGGaUAUC-GGUUGGCaGCaGCGGCCg -3'
miRNA:   3'- aCC-AUAGuCCAGCUGaCGaUGCCGGg -5'
26027 5' -55 NC_005342.2 + 22282 0.68 0.546025
Target:  5'- cGG-AUCAGGUCGcCgccuucGCgACGGCCg -3'
miRNA:   3'- aCCaUAGUCCAGCuGa-----CGaUGCCGGg -5'
26027 5' -55 NC_005342.2 + 15761 0.69 0.535227
Target:  5'- cUGGUGUUguccGGUUacaUGCUGCGGCUCg -3'
miRNA:   3'- -ACCAUAGu---CCAGcugACGAUGCCGGG- -5'
26027 5' -55 NC_005342.2 + 40357 0.69 0.503314
Target:  5'- cUGGUAUCAGGcCGAa----GCGGCCg -3'
miRNA:   3'- -ACCAUAGUCCaGCUgacgaUGCCGGg -5'
26027 5' -55 NC_005342.2 + 22185 0.72 0.350468
Target:  5'- cGGcggCGGuUCGGCgGCUGCGGCCUg -3'
miRNA:   3'- aCCauaGUCcAGCUGaCGAUGCCGGG- -5'
26027 5' -55 NC_005342.2 + 13784 0.72 0.350468
Target:  5'- aUGGUAuUCAGGUCuaugaUGCggGCGGCCUc -3'
miRNA:   3'- -ACCAU-AGUCCAGcug--ACGa-UGCCGGG- -5'
26027 5' -55 NC_005342.2 + 44347 1.13 0.000511
Target:  5'- cUGGUAUCAGGUCGACUGCUACGGCCCg -3'
miRNA:   3'- -ACCAUAGUCCAGCUGACGAUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.