miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 3' -56.9 NC_005342.2 + 44955 0.66 0.542969
Target:  5'- gUGCCGaccuguCCGGCAUCGAagcgcgcauGGCGCcuugGCUCg -3'
miRNA:   3'- uGCGGC------GGUUGUAGCU---------CUGCGa---CGAG- -5'
26028 3' -56.9 NC_005342.2 + 46470 0.66 0.542969
Target:  5'- gACGCacUCGGCGUCGaAGuguccgccGCGCUGCUCg -3'
miRNA:   3'- -UGCGgcGGUUGUAGC-UC--------UGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 36651 0.66 0.542969
Target:  5'- cGCGCCGCCuuCAUCGc-GCGCgaccagUGCa- -3'
miRNA:   3'- -UGCGGCGGuuGUAGCucUGCG------ACGag -5'
26028 3' -56.9 NC_005342.2 + 22657 0.66 0.542969
Target:  5'- cCGUCGCCGGCGUCGGcccgguugcGACGCcgaacacGCUg -3'
miRNA:   3'- uGCGGCGGUUGUAGCU---------CUGCGa------CGAg -5'
26028 3' -56.9 NC_005342.2 + 37219 0.66 0.536511
Target:  5'- -gGCCGCCGgccacggccACGUgaagaucagucguucCGGuGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGGU---------UGUA---------------GCUcUGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 6804 0.66 0.532221
Target:  5'- gAC-UCGCCcGCGUCGAGcaGCGcCUGUUCg -3'
miRNA:   3'- -UGcGGCGGuUGUAGCUC--UGC-GACGAG- -5'
26028 3' -56.9 NC_005342.2 + 12253 0.66 0.532221
Target:  5'- gGCGaCCGCgAACcaggucgCGAGcACGgUGCUCg -3'
miRNA:   3'- -UGC-GGCGgUUGua-----GCUC-UGCgACGAG- -5'
26028 3' -56.9 NC_005342.2 + 38357 0.66 0.532221
Target:  5'- cGCGCCGCCGGCAgcCGGuGCGCaaccgGC-Cg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GCUcUGCGa----CGaG- -5'
26028 3' -56.9 NC_005342.2 + 22337 0.67 0.52581
Target:  5'- gACGCCGCaagggcagcucgcaAGCAgCGAGGCGUUuaUCg -3'
miRNA:   3'- -UGCGGCGg-------------UUGUaGCUCUGCGAcgAG- -5'
26028 3' -56.9 NC_005342.2 + 2951 0.67 0.521552
Target:  5'- aACGCCuCgAGCuUCGGGACGUcGUUCg -3'
miRNA:   3'- -UGCGGcGgUUGuAGCUCUGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 6662 0.67 0.521552
Target:  5'- cCGCCGCUucACGUgCGGGGCGCauugGCg- -3'
miRNA:   3'- uGCGGCGGu-UGUA-GCUCUGCGa---CGag -5'
26028 3' -56.9 NC_005342.2 + 45133 0.67 0.521552
Target:  5'- aACGCCG-CGACAUUGAucGAaGCUGCg- -3'
miRNA:   3'- -UGCGGCgGUUGUAGCU--CUgCGACGag -5'
26028 3' -56.9 NC_005342.2 + 337 0.67 0.521552
Target:  5'- -gGCUGCCAGCAguaaGAGaaGCGCgccgagccacaUGCUCa -3'
miRNA:   3'- ugCGGCGGUUGUag--CUC--UGCG-----------ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 37169 0.67 0.510966
Target:  5'- aACGgCGCCGACAUUccGGCGCUcGC-Ca -3'
miRNA:   3'- -UGCgGCGGUUGUAGcuCUGCGA-CGaG- -5'
26028 3' -56.9 NC_005342.2 + 36266 0.67 0.510966
Target:  5'- cGCGCaggaCGCCAGCAcgcCGcccGGCGCUGCgUCg -3'
miRNA:   3'- -UGCG----GCGGUUGUa--GCu--CUGCGACG-AG- -5'
26028 3' -56.9 NC_005342.2 + 1297 0.67 0.509912
Target:  5'- cGCGCCGCCuuggcuGCG-CGcGAUGCUucgcggcGCUCg -3'
miRNA:   3'- -UGCGGCGGu-----UGUaGCuCUGCGA-------CGAG- -5'
26028 3' -56.9 NC_005342.2 + 46353 0.67 0.500471
Target:  5'- uACGCCGCCGACGacgcuuUCGAcccgGAUGC-GgUCg -3'
miRNA:   3'- -UGCGGCGGUUGU------AGCU----CUGCGaCgAG- -5'
26028 3' -56.9 NC_005342.2 + 17558 0.67 0.500471
Target:  5'- cCGCCGCCGGCGgc--GGCGCgaacgGCUUc -3'
miRNA:   3'- uGCGGCGGUUGUagcuCUGCGa----CGAG- -5'
26028 3' -56.9 NC_005342.2 + 11460 0.67 0.499427
Target:  5'- gACGUuuuccugcaccuuCGCCuuCAUcaCGAGGCGCUGCg- -3'
miRNA:   3'- -UGCG-------------GCGGuuGUA--GCUCUGCGACGag -5'
26028 3' -56.9 NC_005342.2 + 3734 0.67 0.479775
Target:  5'- gUGCCGUaCAGCGUCGAcGugGC-GUUCu -3'
miRNA:   3'- uGCGGCG-GUUGUAGCU-CugCGaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.