miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 5' -58.5 NC_005342.2 + 2727 0.68 0.403362
Target:  5'- gAGAuuGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 29543 0.68 0.403362
Target:  5'- -cGAuCGGCGC--GCC-GCCGGUCGa -3'
miRNA:   3'- guCUuGCCGCGguUGGaCGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 33107 0.68 0.403362
Target:  5'- gUAGAACGGCGau-GCCUG-CGGcgCGGc -3'
miRNA:   3'- -GUCUUGCCGCgguUGGACgGCCa-GCC- -5'
26028 5' -58.5 NC_005342.2 + 7280 0.68 0.403362
Target:  5'- aAGAucACGGCGCCccacguGCCUGCCGacuucuucuGaCGGa -3'
miRNA:   3'- gUCU--UGCCGCGGu-----UGGACGGC---------CaGCC- -5'
26028 5' -58.5 NC_005342.2 + 27446 0.68 0.394386
Target:  5'- -cGAACGGCGCggCGGCg-GCCGGcagCGGu -3'
miRNA:   3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5'
26028 5' -58.5 NC_005342.2 + 2365 0.69 0.368244
Target:  5'- cCAuGACGGCGCCGGCggucGCCuGGUCGc -3'
miRNA:   3'- -GUcUUGCCGCGGUUGga--CGG-CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 37378 0.69 0.359798
Target:  5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3'
miRNA:   3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 33256 0.69 0.351489
Target:  5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3'
miRNA:   3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5'
26028 5' -58.5 NC_005342.2 + 37167 0.69 0.335282
Target:  5'- -cGAACGGCGCCGACauuCCGG-CGc -3'
miRNA:   3'- guCUUGCCGCGGUUGgacGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 14352 0.69 0.335282
Target:  5'- uCAGGuCGGCGaucGCCUGCgCGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCgguUGGACG-GCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 46414 0.7 0.327386
Target:  5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3'
miRNA:   3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 38926 0.7 0.327386
Target:  5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 10080 0.7 0.327386
Target:  5'- -cGAGCGGCguGCCAagAUCggcgGCCGgGUCGGc -3'
miRNA:   3'- guCUUGCCG--CGGU--UGGa---CGGC-CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 11806 0.7 0.326604
Target:  5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3'
miRNA:   3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 17721 0.7 0.319628
Target:  5'- gGGAugGGacaaGCUGGCCggcaGCCuGGUCGGc -3'
miRNA:   3'- gUCUugCCg---CGGUUGGa---CGG-CCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 3899 0.7 0.304528
Target:  5'- gCAGcGGCGGCagGCCGACCgGCaGGUUGGc -3'
miRNA:   3'- -GUC-UUGCCG--CGGUUGGaCGgCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 2844 0.7 0.304528
Target:  5'- cCAGGucuGCGGCcuuGCCGACCUggcGCUGGUCu- -3'
miRNA:   3'- -GUCU---UGCCG---CGGUUGGA---CGGCCAGcc -5'
26028 5' -58.5 NC_005342.2 + 44952 0.7 0.297187
Target:  5'- ----uCGGUGCCGACCUGuCCGGcaUCGa -3'
miRNA:   3'- gucuuGCCGCGGUUGGAC-GGCC--AGCc -5'
26028 5' -58.5 NC_005342.2 + 25710 0.71 0.275988
Target:  5'- gAGAAUGGCuugcucgccgGCCAGCUgcagGCCaGUCGGc -3'
miRNA:   3'- gUCUUGCCG----------CGGUUGGa---CGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 9042 0.71 0.271896
Target:  5'- gGGAugcGCGG-GCCGugCUGCCGGUgcagcgcgcgcagcaCGGg -3'
miRNA:   3'- gUCU---UGCCgCGGUugGACGGCCA---------------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.