Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26029 | 3' | -56.9 | NC_005342.2 | + | 28690 | 0.67 | 0.562317 |
Target: 5'- uCGAACGcggcaaucagcUGCGCGGCcgCCggaucggcgugugcgUCGCGUg -3' miRNA: 3'- uGCUUGC-----------ACGCGCCGuaGG---------------AGUGCGg -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 27036 | 0.67 | 0.55802 |
Target: 5'- cCGGGCGUcGgGuuGCaAUCCUgCGCGCCa -3' miRNA: 3'- uGCUUGCA-CgCgcCG-UAGGA-GUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 10857 | 0.67 | 0.55802 |
Target: 5'- -aGAACGccgGCGCGacaGUCaCUUGCGCCg -3' miRNA: 3'- ugCUUGCa--CGCGCcg-UAG-GAGUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 3284 | 0.67 | 0.551593 |
Target: 5'- cGCcGACGUGCGCGcGCAggauagcugccgacuUCUUCgGCGCg -3' miRNA: 3'- -UGcUUGCACGCGC-CGU---------------AGGAG-UGCGg -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 3632 | 0.67 | 0.547321 |
Target: 5'- cGCGcGGCG-GCaGCGGCAcggugcucUCCcaCACGCCg -3' miRNA: 3'- -UGC-UUGCaCG-CGCCGU--------AGGa-GUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 43157 | 0.67 | 0.547321 |
Target: 5'- gACGGACGcGCGCaucGCGcgCUUgCGCGCCg -3' miRNA: 3'- -UGCUUGCaCGCGc--CGUa-GGA-GUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 770 | 0.67 | 0.547321 |
Target: 5'- uUGAGCGUGC-CGGUcgCCg-GCGCa -3' miRNA: 3'- uGCUUGCACGcGCCGuaGGagUGCGg -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 45348 | 0.67 | 0.547321 |
Target: 5'- gGCGAGCGcgaugaaccGCGCGGUcggCCugUCGCGCa -3' miRNA: 3'- -UGCUUGCa--------CGCGCCGua-GG--AGUGCGg -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 36823 | 0.67 | 0.526126 |
Target: 5'- uCGGGCaGcUGCGgGGCGUgcucgaagCgCUCACGCCg -3' miRNA: 3'- uGCUUG-C-ACGCgCCGUA--------G-GAGUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 13686 | 0.67 | 0.515644 |
Target: 5'- gACGAACGauaGCGCGucCAUgCUCGUGCCg -3' miRNA: 3'- -UGCUUGCa--CGCGCc-GUAgGAGUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 30132 | 0.67 | 0.515644 |
Target: 5'- cCGAAUucGCGCGccguaGCGacugCCUCGCGCCa -3' miRNA: 3'- uGCUUGcaCGCGC-----CGUa---GGAGUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 27597 | 0.67 | 0.515644 |
Target: 5'- uCGAAUa-GCGCGGCGccUUCUgCAUGCCg -3' miRNA: 3'- uGCUUGcaCGCGCCGU--AGGA-GUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 39818 | 0.67 | 0.515644 |
Target: 5'- cGCGAugGa-CGCGGCcgaCCUguCGCCa -3' miRNA: 3'- -UGCUugCacGCGCCGua-GGAguGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 13170 | 0.68 | 0.494943 |
Target: 5'- uACGAuCGUGUGCaGGCG-CgUCGCGUg -3' miRNA: 3'- -UGCUuGCACGCG-CCGUaGgAGUGCGg -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 38016 | 0.68 | 0.494943 |
Target: 5'- cGCGAcCGUGCacGCGGCGaCCggcgaaauGCGCCu -3' miRNA: 3'- -UGCUuGCACG--CGCCGUaGGag------UGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 27558 | 0.68 | 0.494943 |
Target: 5'- gACGAGCG-GCGCGGCcaCUgcggcCACgGCCu -3' miRNA: 3'- -UGCUUGCaCGCGCCGuaGGa----GUG-CGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 4699 | 0.68 | 0.494943 |
Target: 5'- uGCGAucagGCGCGGuCAUCgUCgagauACGCCa -3' miRNA: 3'- -UGCUugcaCGCGCC-GUAGgAG-----UGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 27165 | 0.68 | 0.484734 |
Target: 5'- cGCGAucagccauGCGUGCccccgaggugugGCGGCAgaccgugCUUCGCGCg -3' miRNA: 3'- -UGCU--------UGCACG------------CGCCGUa------GGAGUGCGg -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 10783 | 0.68 | 0.484734 |
Target: 5'- gGCGAGCGccggaaUGU-CGGCGccguUCgUCACGCCg -3' miRNA: 3'- -UGCUUGC------ACGcGCCGU----AGgAGUGCGG- -5' |
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26029 | 3' | -56.9 | NC_005342.2 | + | 39103 | 0.68 | 0.484734 |
Target: 5'- --cAAgGUGCGCGGCuaaC-CGCGCCg -3' miRNA: 3'- ugcUUgCACGCGCCGuagGaGUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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