miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 5' -52.6 NC_005342.2 + 22002 0.67 0.725349
Target:  5'- uCGGcGCGaaUCAGCGCGCGgGCguuuucucgacGCAGAUCa -3'
miRNA:   3'- -GCU-CGC--AGUUGCGCGU-CGa----------CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 24434 0.67 0.723139
Target:  5'- -cGGCGgcuacccgaaaGGCGCGguGCUGCAAAg- -3'
miRNA:   3'- gcUCGCag---------UUGCGCguCGACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 8906 0.67 0.714261
Target:  5'- gCGGuGCGUCGuagaaGCGCGCcGCcgccgaGCGAAUCg -3'
miRNA:   3'- -GCU-CGCAGU-----UGCGCGuCGa-----CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 43185 0.67 0.713147
Target:  5'- uGAGCGUCAcGCGuCGCGGgcucaccCUGCcgaaGGAUCg -3'
miRNA:   3'- gCUCGCAGU-UGC-GCGUC-------GACG----UUUAG- -5'
26029 5' -52.6 NC_005342.2 + 9633 0.68 0.703085
Target:  5'- aCGGGCaG-CGGCGCGCccGGCUGUAGc-- -3'
miRNA:   3'- -GCUCG-CaGUUGCGCG--UCGACGUUuag -5'
26029 5' -52.6 NC_005342.2 + 11947 0.68 0.703085
Target:  5'- aCGcAGCGUCGACGauCGCGGCcGU--AUCg -3'
miRNA:   3'- -GC-UCGCAGUUGC--GCGUCGaCGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 27352 0.68 0.703085
Target:  5'- uGGGUGUCAugGUGCGGUaGCc---- -3'
miRNA:   3'- gCUCGCAGUugCGCGUCGaCGuuuag -5'
26029 5' -52.6 NC_005342.2 + 31545 0.68 0.703085
Target:  5'- gCGAGa-UCAGCGUGUagAGCUGCAGc-- -3'
miRNA:   3'- -GCUCgcAGUUGCGCG--UCGACGUUuag -5'
26029 5' -52.6 NC_005342.2 + 45945 0.68 0.701964
Target:  5'- gCGGGCGUCGAUGUgaucgacGCGGCcGUGAcGUCg -3'
miRNA:   3'- -GCUCGCAGUUGCG-------CGUCGaCGUU-UAG- -5'
26029 5' -52.6 NC_005342.2 + 2320 0.68 0.691835
Target:  5'- cCGuGCGgccguUGCGCAGCUGgAAGUUg -3'
miRNA:   3'- -GCuCGCaguu-GCGCGUCGACgUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 45829 0.68 0.691835
Target:  5'- cCGAGCG-CggUGCGC-GCUacgGCAAGUUc -3'
miRNA:   3'- -GCUCGCaGuuGCGCGuCGA---CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 30978 0.68 0.691835
Target:  5'- uCGAGCGcggCGACgGCGUAuGCcGCGAGUUg -3'
miRNA:   3'- -GCUCGCa--GUUG-CGCGU-CGaCGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 9904 0.68 0.680523
Target:  5'- aCGAGCagGUCGcCGCGCAGgUGUuugccGUCg -3'
miRNA:   3'- -GCUCG--CAGUuGCGCGUCgACGuu---UAG- -5'
26029 5' -52.6 NC_005342.2 + 36039 0.68 0.669161
Target:  5'- cCGGGCGUCGcauCGCcuaCGGUUGCAAGa- -3'
miRNA:   3'- -GCUCGCAGUu--GCGc--GUCGACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 31810 0.68 0.657761
Target:  5'- -cGGCGUCGGCGCGUucAGUgacgGCAGuUCc -3'
miRNA:   3'- gcUCGCAGUUGCGCG--UCGa---CGUUuAG- -5'
26029 5' -52.6 NC_005342.2 + 833 0.69 0.622309
Target:  5'- gCGGGUGUUucgacgacuGGCGCGCuggcggcAGCUGCAGccuuGUCg -3'
miRNA:   3'- -GCUCGCAG---------UUGCGCG-------UCGACGUU----UAG- -5'
26029 5' -52.6 NC_005342.2 + 10187 0.69 0.612019
Target:  5'- gCGGcCGUCGgcaucaaagcuGCGCGCGGuCUGCuuGUCg -3'
miRNA:   3'- -GCUcGCAGU-----------UGCGCGUC-GACGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 19302 0.69 0.612019
Target:  5'- gCGuGCcUCGGCGCGCcGCUGCGc--- -3'
miRNA:   3'- -GCuCGcAGUUGCGCGuCGACGUuuag -5'
26029 5' -52.6 NC_005342.2 + 25052 0.69 0.612019
Target:  5'- uCGAGCGgcagCAcCGCGCuuCUGCucGUCa -3'
miRNA:   3'- -GCUCGCa---GUuGCGCGucGACGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 40430 0.69 0.600604
Target:  5'- gCGAuCGUCAcCG-GCGGCgGCAAGUCg -3'
miRNA:   3'- -GCUcGCAGUuGCgCGUCGaCGUUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.