miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 5' -66 NC_005342.2 + 24699 0.67 0.201962
Target:  5'- cGAUCCGCGCGCgCGacaGCgUGaucuuCCCGUCa -3'
miRNA:   3'- uCUGGGCGCGCG-GC---CGgAC-----GGGCAGc -5'
26030 5' -66 NC_005342.2 + 20889 0.67 0.201962
Target:  5'- uGAUCCGCGaaauccauaCGGCaacGCCCGUCGa -3'
miRNA:   3'- uCUGGGCGCgcg------GCCGga-CGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 33810 0.67 0.201962
Target:  5'- cGGACgaGCgGC-CCGGCaucggGCCCGUCGu -3'
miRNA:   3'- -UCUGggCG-CGcGGCCGga---CGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 44147 0.67 0.201962
Target:  5'- -uGCCgGCGCGUgcgaggcgcuUGGCCUGCCgGUg- -3'
miRNA:   3'- ucUGGgCGCGCG----------GCCGGACGGgCAgc -5'
26030 5' -66 NC_005342.2 + 46212 0.67 0.201962
Target:  5'- aAGGCUgcaaGCGCGCCGGUg-GUCUGUCc -3'
miRNA:   3'- -UCUGGg---CGCGCGGCCGgaCGGGCAGc -5'
26030 5' -66 NC_005342.2 + 31087 0.67 0.199449
Target:  5'- -cGCCCGgGCaccagaucaggcaGUCGGCCgugccgaacagucGCCCGUCGa -3'
miRNA:   3'- ucUGGGCgCG-------------CGGCCGGa------------CGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 27381 0.67 0.196964
Target:  5'- -uGCCCgGCGCGaCGGCCgUG-CCGUCa -3'
miRNA:   3'- ucUGGG-CGCGCgGCCGG-ACgGGCAGc -5'
26030 5' -66 NC_005342.2 + 14925 0.67 0.196964
Target:  5'- uGAUCCgugGCGCGCCGGUUgGCUCGaugCGg -3'
miRNA:   3'- uCUGGG---CGCGCGGCCGGaCGGGCa--GC- -5'
26030 5' -66 NC_005342.2 + 14142 0.67 0.196964
Target:  5'- cGGGCCCGa-UGCCgGGCC-GCUCGUCc -3'
miRNA:   3'- -UCUGGGCgcGCGG-CCGGaCGGGCAGc -5'
26030 5' -66 NC_005342.2 + 8973 0.67 0.196964
Target:  5'- cGACCgaCGCGCGUucgCGGCUUGCCaggCGg -3'
miRNA:   3'- uCUGG--GCGCGCG---GCCGGACGGgcaGC- -5'
26030 5' -66 NC_005342.2 + 11807 0.67 0.19647
Target:  5'- cGGCgCGCuccagcuuGCGCCGGUacaucgcuuccguCUGCCgGUCGg -3'
miRNA:   3'- uCUGgGCG--------CGCGGCCG-------------GACGGgCAGC- -5'
26030 5' -66 NC_005342.2 + 42924 0.67 0.194017
Target:  5'- -aGCgCCGCGCcgacgucggccaacaGCCGGCCgccuggccGCCUGUCa -3'
miRNA:   3'- ucUG-GGCGCG---------------CGGCCGGa-------CGGGCAGc -5'
26030 5' -66 NC_005342.2 + 32639 0.67 0.192075
Target:  5'- cGGugCCGCGCacaaauggcaGCagguaGGCgUGCgCGUCGg -3'
miRNA:   3'- -UCugGGCGCG----------CGg----CCGgACGgGCAGC- -5'
26030 5' -66 NC_005342.2 + 168 0.67 0.192075
Target:  5'- -uGCCCGUGCGCCcgccggcuuGGCUUGCgCCauaaaugugcGUCGg -3'
miRNA:   3'- ucUGGGCGCGCGG---------CCGGACG-GG----------CAGC- -5'
26030 5' -66 NC_005342.2 + 7815 0.67 0.192075
Target:  5'- uGuCCCGCuuaguaggagugGCGUugCGGCCuuUGCCCGUCu -3'
miRNA:   3'- uCuGGGCG------------CGCG--GCCGG--ACGGGCAGc -5'
26030 5' -66 NC_005342.2 + 25127 0.67 0.187292
Target:  5'- cGGCgCGCaCGUucgCGGCCUGCCCGa-- -3'
miRNA:   3'- uCUGgGCGcGCG---GCCGGACGGGCagc -5'
26030 5' -66 NC_005342.2 + 5013 0.67 0.187292
Target:  5'- cGGCCagGCG-GCCGGCUguugGCCgaCGUCGg -3'
miRNA:   3'- uCUGGg-CGCgCGGCCGGa---CGG--GCAGC- -5'
26030 5' -66 NC_005342.2 + 40918 0.67 0.187292
Target:  5'- cGACUCGUGCGCgaGGgCUaCCUGUCGc -3'
miRNA:   3'- uCUGGGCGCGCGg-CCgGAcGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 21160 0.67 0.187292
Target:  5'- uGGugCgcuuCGCGCugccgcagGCCGGCCUGCUCGgggCa -3'
miRNA:   3'- -UCugG----GCGCG--------CGGCCGGACGGGCa--Gc -5'
26030 5' -66 NC_005342.2 + 39388 0.67 0.182615
Target:  5'- gAGGCggCGCGCuuccugGUCGGCCUGCCUG-CGc -3'
miRNA:   3'- -UCUGg-GCGCG------CGGCCGGACGGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.