Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26031 | 3' | -51.8 | NC_005342.2 | + | 19365 | 0.67 | 0.74909 |
Target: 5'- cGUGCgGCaCGAGCgc-UCgAGCGUGCa -3' miRNA: 3'- aCACGaCGcGCUCGacaAG-UUGUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 38831 | 0.67 | 0.74909 |
Target: 5'- --aGCUGCGguCGAGCaGgcaaagcgCGACGUGCg -3' miRNA: 3'- acaCGACGC--GCUCGaCaa------GUUGUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 33670 | 0.67 | 0.74909 |
Target: 5'- --gGCgaacgGCGcCGcGCUGaUCGACAUGCu -3' miRNA: 3'- acaCGa----CGC-GCuCGACaAGUUGUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 11114 | 0.68 | 0.738148 |
Target: 5'- cGUGCgGCGUGAGCgcUUCgAGCAcGCc -3' miRNA: 3'- aCACGaCGCGCUCGacAAG-UUGUaCG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 30343 | 0.68 | 0.727089 |
Target: 5'- cGUGCagcaGCGCG-GCaagGcgCGGCGUGCg -3' miRNA: 3'- aCACGa---CGCGCuCGa--CaaGUUGUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 40117 | 0.68 | 0.715926 |
Target: 5'- aUGggGCgaGCGCGAGCUGgaaauGGCcgGCg -3' miRNA: 3'- -ACa-CGa-CGCGCUCGACaag--UUGuaCG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 31562 | 0.68 | 0.704671 |
Target: 5'- --aGCUGCaGCGGGUUGUUUgccuGCAucUGCu -3' miRNA: 3'- acaCGACG-CGCUCGACAAGu---UGU--ACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 13953 | 0.69 | 0.647489 |
Target: 5'- gGUGC-GCGCGAGCUGa-----GUGCc -3' miRNA: 3'- aCACGaCGCGCUCGACaaguugUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 23259 | 0.7 | 0.612894 |
Target: 5'- --cGCUGuCGCGcGCgcgGaUCGGCAUGCa -3' miRNA: 3'- acaCGAC-GCGCuCGa--CaAGUUGUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 28705 | 0.7 | 0.612894 |
Target: 5'- --aGCUGCGCGGccGCcgGaUCGGCGUGUg -3' miRNA: 3'- acaCGACGCGCU--CGa-CaAGUUGUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 22912 | 0.7 | 0.601384 |
Target: 5'- gGUGCUGCcgcuCGAGUUGUgCAGCGUa- -3' miRNA: 3'- aCACGACGc---GCUCGACAaGUUGUAcg -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 44611 | 0.7 | 0.589903 |
Target: 5'- --cGCUGCGCcAGCUGaUCGAgcUGCg -3' miRNA: 3'- acaCGACGCGcUCGACaAGUUguACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 30707 | 0.7 | 0.589903 |
Target: 5'- -cUGCUGCuGCGGGCUGcUCGcacgauAgGUGCg -3' miRNA: 3'- acACGACG-CGCUCGACaAGU------UgUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 19544 | 0.7 | 0.578462 |
Target: 5'- cGUGCUGCucGCGAuCUGgcagCAGCAcGCg -3' miRNA: 3'- aCACGACG--CGCUcGACaa--GUUGUaCG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 9494 | 0.71 | 0.567069 |
Target: 5'- cGUGCgccUGCGCguuuugcucgacGAGCUGcUUCAGCGcgGCa -3' miRNA: 3'- aCACG---ACGCG------------CUCGAC-AAGUUGUa-CG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 5582 | 0.71 | 0.567069 |
Target: 5'- --cGCUGuUGCGGGCUGcUCGACGggagacgcUGCg -3' miRNA: 3'- acaCGAC-GCGCUCGACaAGUUGU--------ACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 21614 | 0.71 | 0.533273 |
Target: 5'- cGUGCgUG-GCGAGCUGUUCcgUAUccGCg -3' miRNA: 3'- aCACG-ACgCGCUCGACAAGuuGUA--CG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 15251 | 0.72 | 0.500223 |
Target: 5'- cGUGCUGCgGCGGcGCgg-UCAGCAUcaGCa -3' miRNA: 3'- aCACGACG-CGCU-CGacaAGUUGUA--CG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 8935 | 0.72 | 0.489407 |
Target: 5'- --cGCgUGCGCGGGCUGgau--CGUGCg -3' miRNA: 3'- acaCG-ACGCGCUCGACaaguuGUACG- -5' |
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26031 | 3' | -51.8 | NC_005342.2 | + | 31384 | 0.72 | 0.469164 |
Target: 5'- aUGUGCcuucagcagcagcggGCGaCGAGUUGUcCGGCAUGCc -3' miRNA: 3'- -ACACGa--------------CGC-GCUCGACAaGUUGUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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